Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 SNORD115-15-201ENST00000364809 81 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-1-201ENST00000364961 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-26-201ENST00000365067 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-10-201ENST00000365073 81 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 RNU6-326P-201ENST00000365480 107 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-43-201ENST00000365503 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-36-201ENST00000365629 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.376-201ENST00000365638 108 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.380-201ENST00000365663 111 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 MIR520F-201ENST00000384824 87 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 MIR573-201ENST00000384964 99 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 MIR520H-201ENST00000385126 88 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.587-201ENST00000391210 103 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 MTND4LP11-201ENST00000422184 280 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 HMGN1P33-201ENST00000432945 451 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 RNU6-977P-201ENST00000516411 103 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORA27.4-201ENST00000516650 95 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD36C-201ENST00000516733 66 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.711-201ENST00000516993 102 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 RNA5SP330-201ENST00000517096 96 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.721-201ENST00000517207 102 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 MIR4264-201ENST00000583520 66 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 AP000942.4-201ENST00000604811 241 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-40-201ENST00000606510 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.37-201ENST00000362606 108 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 SNORD61-201ENST00000384252 73 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNU2-70P-201ENST00000410718 179 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNU7-62P-201ENST00000458856 62 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 AC107297.1-201ENST00000459991 176 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNU6-693P-201ENST00000516134 107 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1137P-201ENST00000517073 99 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1270P-201ENST00000517128 108 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 AC113195.1-201ENST00000579952 141 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 MIR4804-201ENST00000581683 73 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 AL355297.3-201ENST00000604082 446 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 MIR8055-201ENST00000610739 97 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 MIR8087-201ENST00000612745 78 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 MIR6740-201ENST00000618268 113 ntBASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.33□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.24-201ENST00000362508 103 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.128-201ENST00000363391 112 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 RNU6-716P-201ENST00000365621 103 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.455-201ENST00000384230 98 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 SNORA53-201ENST00000391141 249 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 AP003733.2-201ENST00000529409 171 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 MIR4680-201ENST00000580906 66 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 MIR4676-201ENST00000583078 72 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 AC134503.1-201ENST00000633048 54 ntBASIC0.32□□□□□ -2.36
KLHL28Q9NXS3 AC010332.2-201ENST00000613083 1904 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR330-201ENST00000362196 94 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR18A-201ENST00000362310 71 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.84-201ENST00000363011 104 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.153-201ENST00000363615 91 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.158-201ENST00000363651 101 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 RNU6-514P-201ENST00000384208 107 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.460-201ENST00000384255 102 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 SNORA27-201ENST00000384323 126 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.535-201ENST00000384612 99 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR526A2-201ENST00000390198 65 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 SNORA40.5-201ENST00000391061 128 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR548P-201ENST00000408336 84 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1190P-201ENST00000410811 104 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 AC087499.4-201ENST00000448505 178 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 AL138752.1-201ENST00000452964 351 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 RNU7-73P-201ENST00000458743 63 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 RNU7-56P-201ENST00000458744 62 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 SCARNA24.2-201ENST00000516968 130 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 AC100767.1-201ENST00000528178 123 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR4514-201ENST00000581410 57 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 MIR3171-201ENST00000584270 74 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.802-201ENST00000614892 130 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 Z97988.1-201ENST00000637697 135 ntBASIC0.31□□□□□ -2.36
KLHL28Q9NXS3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 MIRLET7D-201ENST00000362263 87 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.117-201ENST00000363294 101 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1309P-201ENST00000363305 108 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.229-201ENST00000364347 113 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 RNU6-211P-201ENST00000384047 107 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 AF228730.3-201ENST00000436691 102 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 AC020661.2-201ENST00000560114 134 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 MIR3612-201ENST00000579753 87 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 AC006006.1-201ENST00000603082 144 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 AC008608.1-201ENST00000603910 127 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 AC037487.3-201ENST00000606668 112 ntBASIC0.3□□□□□ -2.36
KLHL28Q9NXS3 UBE2WP1-201ENST00000362030 340 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.61-201ENST00000362835 102 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.66-201ENST00000362862 102 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-888P-201ENST00000363010 101 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.91-201ENST00000363042 107 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.276-201ENST00000364732 109 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU5E-4P-201ENST00000364931 120 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-867P-201ENST00000364956 107 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 252.3 ms