Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.701-201ENST00000516812 110 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 SCARNA24.2-201ENST00000516968 130 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 RNU6-958P-201ENST00000516995 106 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 AC100767.1-201ENST00000528178 123 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 MIR1273G-201ENST00000577677 100 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 AP000942.4-201ENST00000604811 241 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 uc_338.17-201ENST00000619633 179 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 AC134878.1-201ENST00000619901 243 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.59□□□□□ -2.31
DDX28Q9NUL7 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.59□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.24-201ENST00000362508 103 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 SNORD114-23-201ENST00000363536 72 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.275-201ENST00000364726 110 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-934P-201ENST00000365154 107 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-639P-201ENST00000384074 107 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-1289P-201ENST00000384431 106 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 MIR626-201ENST00000385032 94 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-205P-201ENST00000390858 107 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU2-55P-201ENST00000411146 174 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-938P-201ENST00000411285 103 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 AC244098.3-201ENST00000424803 96 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU7-73P-201ENST00000458743 63 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 RNU6-504P-201ENST00000516568 104 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 DEFB108E-201ENST00000524692 240 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 AP003484.1-201ENST00000530974 250 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 AC011195.1-201ENST00000578177 177 ntBASIC0.59□□□□□ -2.31
DDX28Q9NUL7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.58□□□□□ -2.32
DDX28Q9NUL7 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.229-201ENST00000364347 113 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 SNORD61-201ENST00000384252 73 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 SNORA27-201ENST00000384323 126 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 MIR518F-201ENST00000384973 87 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 SNORA26-201ENST00000391286 122 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 AC244023.1-201ENST00000426884 112 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 MTND5P22-201ENST00000458380 195 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 SNORA18.4-201ENST00000516440 124 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 AC044792.1-201ENST00000593294 196 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 AC242498.1-201ENST00000604134 111 ntBASIC0.58□□□□□ -2.32
DDX28Q9NUL7 RNU6-369P-201ENST00000362515 102 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 RNU6-888P-201ENST00000363010 101 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 SNORD38B-201ENST00000384690 67 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 MIR548A2-201ENST00000384956 97 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 MIR936-201ENST00000401264 98 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 AC090844.1-201ENST00000422019 156 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 RNU7-53P-201ENST00000516705 60 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.57□□□□□ -2.32
DDX28Q9NUL7 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.57□□□□□ -2.32
DDX28Q9NUL7 MIR8055-201ENST00000610739 97 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 SNORD38B-202ENST00000625943 69 ntBASIC0.57□□□□□ -2.32
DDX28Q9NUL7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.44-201ENST00000362676 108 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 SNORA63C-201ENST00000364578 129 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RNY3P5-201ENST00000384127 102 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RNU6-1109P-201ENST00000391187 107 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 snoU13.21-201ENST00000459368 105 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RPS29P24-201ENST00000486345 171 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RNU6-1299P-201ENST00000516316 100 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RNU6-570P-201ENST00000517051 105 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 MIR5087-201ENST00000635826 76 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 AC010487.4-201ENST00000637027 61 ntBASIC0.56□□□□□ -2.32
DDX28Q9NUL7 RNU6-1227P-201ENST00000383981 107 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.572-201ENST00000384757 98 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 TRBVB-201ENST00000477100 408 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 RNU6-977P-201ENST00000516411 103 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 RNU6-1270P-201ENST00000517128 108 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 Z97988.1-201ENST00000637697 135 ntBASIC0.55□□□□□ -2.32
DDX28Q9NUL7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.66-201ENST00000362862 102 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.117-201ENST00000363294 101 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNU6-913P-201ENST00000390913 95 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNA5SP222-201ENST00000411039 105 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 SNORD83.1-201ENST00000411362 77 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNU7-62P-201ENST00000458856 62 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNU4-54P-201ENST00000516428 129 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNA5SP153-201ENST00000516498 76 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 SNORD36C-201ENST00000516733 66 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 AC004812.1-201ENST00000540773 146 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 AC018659.1-201ENST00000551083 169 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 AP001282.2-201ENST00000616149 309 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 MIR924-201ENST00000638017 53 ntBASIC0.54□□□□□ -2.32
DDX28Q9NUL7 RNU6-740P-201ENST00000364734 105 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 Y_RNA.410-201ENST00000383992 113 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 MIR520F-201ENST00000384824 87 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 RNU2-70P-201ENST00000410718 179 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.53□□□□□ -2.32
DDX28Q9NUL7 RNA5SP121-201ENST00000516537 101 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 MIR4771-2-201ENST00000577758 74 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 MIR4771-1-201ENST00000582617 74 ntBASIC0.53□□□□□ -2.32
DDX28Q9NUL7 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.11-201ENST00000362375 109 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.82-201ENST00000363000 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.92-201ENST00000363043 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.235-201ENST00000364412 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.237-201ENST00000364439 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.634-201ENST00000364811 113 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.306-201ENST00000365015 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.312-201ENST00000365089 102 ntBASIC0.52□□□□□ -2.33
DDX28Q9NUL7 Y_RNA.322-201ENST00000365151 102 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 183.5 ms