Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RNU7-73P-201ENST00000458743 63 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 PDCD5P2-201ENST00000507570 312 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 RNU4-71P-201ENST00000516258 113 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 MIR6078-201ENST00000611069 100 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 SNORD113.3-201ENST00000364630 78 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 RNU6-1189P-201ENST00000383958 107 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 SNORD111-201ENST00000408139 94 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 AL121914.1-201ENST00000450188 156 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 AC108210.2-201ENST00000503681 201 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 MIR8055-201ENST00000610739 97 ntBASIC0.92□□□□□ -2.26
CHMP1AQ9HD42 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 SNORA2B-201ENST00000384583 137 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 Y_RNA.571-201ENST00000384753 98 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 AC244023.1-201ENST00000426884 112 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 AL138752.1-201ENST00000452964 351 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 RNU7-95P-201ENST00000459222 64 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 RNA5SP255-201ENST00000516370 107 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 MIR3129-201ENST00000581095 76 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 MIR4661-201ENST00000582720 75 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 AC242498.1-201ENST00000604134 111 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.91□□□□□ -2.26
CHMP1AQ9HD42 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
CHMP1AQ9HD42 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CHMP1AQ9HD42 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.121-201ENST00000363309 113 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.168-201ENST00000363740 102 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 RNU6-580P-201ENST00000365159 107 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 MT-TN-201ENST00000387400 73 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 RNU6-205P-201ENST00000390858 107 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 SNORA17.3-201ENST00000391159 129 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 SNORA79-201ENST00000408376 140 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 AL035398.1-201ENST00000430869 322 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 FABP5P4-201ENST00000437203 171 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 RNU7-96P-201ENST00000459535 64 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 RNU6-998P-201ENST00000515894 101 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 AC004817.2-201ENST00000561794 651 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 MIR4295-201ENST00000585286 85 ntBASIC0.9□□□□□ -2.27
CHMP1AQ9HD42 RNU6-978P-201ENST00000364371 103 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.542-201ENST00000384641 111 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 HMGN1P33-201ENST00000432945 451 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.797-201ENST00000515977 94 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 RNU7-53P-201ENST00000516705 60 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 AL353997.5-201ENST00000618886 171 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 Z97988.1-201ENST00000637697 135 ntBASIC0.89□□□□□ -2.27
CHMP1AQ9HD42 MIR377-201ENST00000362145 69 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.182-201ENST00000363880 111 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU6-1335P-201ENST00000365426 107 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 MIR764-201ENST00000390811 85 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU6-918P-201ENST00000391219 106 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU6-1190P-201ENST00000410811 104 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 POLR2J4-204ENST00000418424 324 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 BTF3P4-201ENST00000418852 495 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU2-11P-201ENST00000459191 187 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 AC087343.1-201ENST00000477341 475 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 MIR378D2-201ENST00000580636 98 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 AL365205.2-201ENST00000594586 68 ntBASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
CHMP1AQ9HD42 RNU6-1292P-201ENST00000383856 107 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 RPS3AP1-201ENST00000413190 320 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 snoU13.21-201ENST00000459368 105 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 MIR4264-201ENST00000583520 66 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 MIR5197-201ENST00000583721 112 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 AP000753.3-201ENST00000604083 169 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 SNORD114-21-201ENST00000606412 72 ntBASIC0.87□□□□□ -2.27
CHMP1AQ9HD42 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.200-201ENST00000364018 102 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 RNU6-275P-201ENST00000364910 107 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.412-201ENST00000384001 104 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 RNU4-70P-201ENST00000384579 139 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 SNORD89-201ENST00000390981 114 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 MIR548I3-201ENST00000408378 149 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 RNU6-994P-201ENST00000410507 111 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 AC108667.1-201ENST00000428618 249 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 U7.7-201ENST00000459276 60 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 SNORD116-25-201ENST00000516517 92 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 AC009779.6-201ENST00000603972 165 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 U6.106-201ENST00000636360 105 ntBASIC0.86□□□□□ -2.27
CHMP1AQ9HD42 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 MIR342-201ENST00000362212 99 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 MIR411-201ENST00000362239 96 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 RNU6-47P-201ENST00000383866 107 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 RNU6-643P-201ENST00000384018 107 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 SNORA11.2-201ENST00000408318 127 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms