Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 Y_RNA.24-201ENST00000362508 103 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.276-201ENST00000364732 109 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 SNORA24-201ENST00000384096 131 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 MIR526A2-201ENST00000390198 65 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 MTND5P22-201ENST00000458380 195 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 SNORA18.4-201ENST00000516440 124 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 AC100767.1-201ENST00000528178 123 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 MIR4680-201ENST00000580906 66 ntBASIC0.66□□□□□ -2.3
CHMP4AQ9BY43 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 RNU6-369P-201ENST00000362515 102 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.37-201ENST00000362606 108 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 RNY1P8-201ENST00000383970 114 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 AC244023.1-201ENST00000426884 112 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 AL731563.1-201ENST00000442202 214 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 AL157398.1-201ENST00000452981 186 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 RNU6-126P-201ENST00000516685 103 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 RNU6-365P-201ENST00000517113 106 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 AC242498.1-201ENST00000604134 111 ntBASIC0.65□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.36-201ENST00000362602 112 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.84-201ENST00000363011 104 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 SNORD61-201ENST00000384252 73 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 SNORA8.3-201ENST00000384679 139 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 SNORD38B-201ENST00000384690 67 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.572-201ENST00000384757 98 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 MIR518F-201ENST00000384973 87 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 SNORA40.5-201ENST00000391061 128 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 SNORD38B-202ENST00000625943 69 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 MIR5087-201ENST00000635826 76 ntBASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.64□□□□□ -2.31
CHMP4AQ9BY43 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 RNU6-211P-201ENST00000384047 107 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.466-201ENST00000384294 113 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 SNORA27-201ENST00000384323 126 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 RNU6-913P-201ENST00000390913 95 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 MIR936-201ENST00000401264 98 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 RNU6-938P-201ENST00000411285 103 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 AC114737.2-201ENST00000421583 173 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 SERF1AP1-201ENST00000514575 187 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 RNU7-53P-201ENST00000516705 60 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 SNORD36C-201ENST00000516733 66 ntBASIC0.63□□□□□ -2.31
CHMP4AQ9BY43 SNORA50A-201ENST00000384225 134 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1289P-201ENST00000384431 106 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 AC113618.1-201ENST00000416747 285 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 RPS29P24-201ENST00000486345 171 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1338P-201ENST00000516328 91 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 RNU6-570P-201ENST00000517051 105 ntBASIC0.62□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.153-201ENST00000363615 91 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.229-201ENST00000364347 113 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 SNORD24-201ENST00000383884 75 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 MIR216A-201ENST00000385063 110 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 HMGN1P33-201ENST00000432945 451 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 AL138752.1-201ENST00000452964 351 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 RNU7-73P-201ENST00000458743 63 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 RNU6-504P-201ENST00000516568 104 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 AC020661.2-201ENST00000560114 134 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 MIR4676-201ENST00000583078 72 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 AL589743.1-201ENST00000551932 2712 ntBASIC0.61□□□□□ -2.31
CHMP4AQ9BY43 AC010332.2-201ENST00000613083 1904 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 UBE2WP1-201ENST00000362030 340 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.117-201ENST00000363294 101 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.202-201ENST00000364083 110 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 MIR548A2-201ENST00000384956 97 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1132P-201ENST00000459214 107 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 MIR5688-201ENST00000580619 83 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 MIR4804-201ENST00000581683 73 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 AC020891.4-201ENST00000605745 93 ntBASIC0.6□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.7-201ENST00000362352 102 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1309P-201ENST00000363305 108 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 SNORA1.1-201ENST00000364671 133 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 Y_RNA.393-201ENST00000383936 102 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 RNU2-70P-201ENST00000410718 179 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1299P-201ENST00000516316 100 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 RNU6-1137P-201ENST00000517073 99 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 uc_338.6-201ENST00000613544 171 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 MIR6740-201ENST00000618268 113 ntBASIC0.59□□□□□ -2.31
CHMP4AQ9BY43 MIR342-201ENST00000362212 99 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 RNU6-888P-201ENST00000363010 101 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 SNORD114-26-201ENST00000363543 72 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 RNU6-1203P-201ENST00000410703 110 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 RN7SL793P-201ENST00000583259 296 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 AL356055.1-201ENST00000602528 446 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 AL162730.1-201ENST00000605734 292 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 PVT1_3.1-201ENST00000620853 95 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 AC243829.3-201ENST00000622177 108 ntBASIC0.58□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.275-201ENST00000364726 110 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 MIR588-201ENST00000384900 83 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 MIR626-201ENST00000385032 94 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.622-201ENST00000411091 108 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 AC098934.3-201ENST00000430450 190 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 MIR3612-201ENST00000579753 87 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms