Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AL138752.1-201ENST00000452964 351 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-388P-201ENST00000517012 105 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-389P-201ENST00000517048 105 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AP003484.1-201ENST00000530974 250 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 MRPS18CP4-201ENST00000535821 231 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AL365205.2-201ENST00000594586 68 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AP000942.3-201ENST00000603702 160 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AL157834.3-201ENST00000615543 103 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 AC027335.2-201ENST00000624030 375 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.23-201ENST00000362496 106 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU1-124P-201ENST00000363861 145 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.241-201ENST00000364470 117 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.274-201ENST00000364714 101 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-200P-201ENST00000364743 107 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.297-201ENST00000364950 91 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-1292P-201ENST00000383856 107 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-643P-201ENST00000384018 107 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-910P-201ENST00000390844 107 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-938P-201ENST00000411285 103 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 AC108667.1-201ENST00000428618 249 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.644-201ENST00000459006 113 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 RPS26P48-201ENST00000491713 339 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 SNORD79.1-201ENST00000516069 84 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.674-201ENST00000516362 113 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 SNORD116-25-201ENST00000516517 92 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 MIR378D2-201ENST00000580636 98 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 AC072026.1-201ENST00000605023 201 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 AC078938.1-201ENST00000620993 318 ntBASIC0.92□□□□□ -2.26
CCDC28BQ9BUN5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 MIR103A2-201ENST00000362154 78 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.257-201ENST00000364596 102 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-312P-201ENST00000364629 107 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-1189P-201ENST00000383958 107 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 BTF3P4-201ENST00000418852 495 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 AF228730.3-201ENST00000436691 102 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 AC087343.1-201ENST00000477341 475 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 AC108729.3-201ENST00000513484 108 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 AC243994.1-201ENST00000618627 109 ntBASIC0.91□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-978P-201ENST00000364371 103 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.233-201ENST00000364407 101 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.363-201ENST00000365529 113 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.412-201ENST00000384001 104 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 SNORA27-201ENST00000384323 126 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 MIR19B1-201ENST00000384829 87 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 MIR222-201ENST00000384992 110 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 MIR1185-1-201ENST00000408598 86 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 AL392103.1-201ENST00000447000 198 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 snoU13.16-201ENST00000459350 104 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-21P-201ENST00000459430 62 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 RPS29P24-201ENST00000486345 171 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 SNORA18.4-201ENST00000516440 124 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 MIR4431-201ENST00000579990 94 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 U6.106-201ENST00000636360 105 ntBASIC0.9□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.338-201ENST00000365320 114 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-47P-201ENST00000383866 107 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.785-201ENST00000384290 109 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 MIR570-201ENST00000384917 97 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 SNORD77.3-201ENST00000391113 65 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.793-201ENST00000411222 111 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-73P-201ENST00000458743 63 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-96P-201ENST00000459535 64 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-138P-201ENST00000515952 107 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-53P-201ENST00000516705 60 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 SNORD36C-201ENST00000516733 66 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 MIR6078-201ENST00000611069 100 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 SEPT14P17-201ENST00000617978 177 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 MTND1P7-201ENST00000632801 297 ntBASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC28BQ9BUN5 SNORA25.3-201ENST00000363205 127 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 SNORA1-201ENST00000384107 130 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.440-201ENST00000384120 114 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.494-201ENST00000384432 111 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 SNORA75.2-201ENST00000391138 150 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 SNORA75.3-201ENST00000391231 150 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 MIR1302-7-201ENST00000408841 72 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 AC063976.4-201ENST00000421971 163 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-67P-201ENST00000459003 62 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-90P-201ENST00000459216 62 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 AC005840.1-201ENST00000498412 377 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 AP002392.1-201ENST00000537692 208 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 MIR5197-201ENST00000583721 112 ntBASIC0.88□□□□□ -2.27
CCDC28BQ9BUN5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.29-201ENST00000362570 113 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-396P-201ENST00000365369 105 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-597P-201ENST00000365620 102 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 AL035398.1-201ENST00000430869 322 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-120P-201ENST00000459334 63 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-998P-201ENST00000515894 101 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 MIR2115-201ENST00000516657 100 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 MIR548AO-201ENST00000579992 96 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 MIR3129-201ENST00000581095 76 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 184.3 ms