Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 RNU6-958P-201ENST00000516995 106 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 AC100767.1-201ENST00000528178 123 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 MIR4771-2-201ENST00000577758 74 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 MIR4771-1-201ENST00000582617 74 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 MIR3171-201ENST00000584270 74 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 Z83818.1-201ENST00000603584 150 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.44□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.16-201ENST00000362421 102 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.26-201ENST00000362539 101 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.64-201ENST00000362845 102 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.153-201ENST00000363615 91 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 RNU4-45P-201ENST00000365469 141 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 SNORD38B-201ENST00000384690 67 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 MIR520H-201ENST00000385126 88 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC113618.1-201ENST00000416747 285 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC244023.1-201ENST00000426884 112 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 RPS29P24-201ENST00000486345 171 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-1338P-201ENST00000516328 91 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC020661.2-201ENST00000560114 134 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 AC242498.1-201ENST00000604134 111 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 MIR6513-201ENST00000621188 64 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 SNORD38B-202ENST00000625943 69 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 Z97988.1-201ENST00000637697 135 ntBASIC0.43□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.229-201ENST00000364347 113 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU4-10P-201ENST00000364383 140 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.275-201ENST00000364726 110 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 SNORA36.2-201ENST00000384004 127 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-211P-201ENST00000384047 107 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 SNORD61-201ENST00000384252 73 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-1237P-201ENST00000384777 107 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-913P-201ENST00000390913 95 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU2-55P-201ENST00000411146 174 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-504P-201ENST00000516568 104 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 MIR4804-201ENST00000581683 73 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 MIR8055-201ENST00000610739 97 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 MIR6515-201ENST00000619843 57 ntBASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.202-201ENST00000364083 110 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.216-201ENST00000364205 93 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 MIR140-201ENST00000385282 100 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-1203P-201ENST00000410703 110 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 RNU7-96P-201ENST00000459535 64 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 RNU6-1270P-201ENST00000517128 108 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 MIR4676-201ENST00000583078 72 ntBASIC0.41□□□□□ -2.34
KLHDC3Q9BQ90 Y_RNA.24-201ENST00000362508 103 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.66-201ENST00000362862 102 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 RNY3P5-201ENST00000384127 102 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-1289P-201ENST00000384431 106 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 MIR626-201ENST00000385032 94 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 MIR613-201ENST00000385248 95 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 MIR18B-201ENST00000454574 71 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 RN7SKP12-201ENST00000516275 143 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-1299P-201ENST00000516316 100 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 SNORD36C-201ENST00000516733 66 ntBASIC0.4□□□□□ -2.35
KLHDC3Q9BQ90 SNORA1.1-201ENST00000364671 133 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.410-201ENST00000383992 113 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 MIR936-201ENST00000401264 98 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-985P-201ENST00000410182 104 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 MTND5P22-201ENST00000458380 195 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 SCARNA24.2-201ENST00000516968 130 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 MIR6740-201ENST00000618268 113 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 MIR5087-201ENST00000635826 76 ntBASIC0.39□□□□□ -2.35
KLHDC3Q9BQ90 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.44-201ENST00000362676 108 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-797P-201ENST00000363101 109 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNY1-201ENST00000364228 113 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNY1P8-201ENST00000383970 114 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-484P-201ENST00000384016 107 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 MIR938-201ENST00000401216 83 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 MIR548I3-201ENST00000408378 149 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNU2-70P-201ENST00000410718 179 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC114737.2-201ENST00000421583 173 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC015818.7-201ENST00000428754 109 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC087499.7-201ENST00000441958 109 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-998P-201ENST00000515894 101 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 RNA5SP153-201ENST00000516498 76 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 MIR4711-201ENST00000578274 70 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AL356055.1-201ENST00000602528 446 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC097639.2-201ENST00000603159 172 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC020891.4-201ENST00000605745 93 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 uc_338.6-201ENST00000613544 171 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC243829.3-201ENST00000622177 108 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 AC010332.2-201ENST00000613083 1904 ntBASIC0.38□□□□□ -2.35
KLHDC3Q9BQ90 MIR18A-201ENST00000362310 71 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.118-201ENST00000363300 101 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.634-201ENST00000364811 113 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 SNORA33.2-201ENST00000365413 134 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-1189P-201ENST00000383958 107 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 RNU6-639P-201ENST00000384074 107 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.432-201ENST00000384087 111 ntBASIC0.37□□□□□ -2.35
KLHDC3Q9BQ90 Y_RNA.572-201ENST00000384757 98 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 247.3 ms