Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 MRPS35P2-201ENST00000508242 191 ntBASIC0.07□□□□□ -2.4
PKNOX2Q96KN3 FGF7P4-201ENST00000509595 295 ntBASIC0.07□□□□□ -2.4
PKNOX2Q96KN3 RNU6-1046P-201ENST00000516538 107 ntBASIC0.07□□□□□ -2.4
PKNOX2Q96KN3 AC069113.3-201ENST00000521019 150 ntBASIC0.07□□□□□ -2.4
PKNOX2Q96KN3 MIR30D-201ENST00000362283 70 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 MIR367-201ENST00000362299 68 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 RNU6-1309P-201ENST00000363305 108 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 SNORD24-201ENST00000383884 75 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 RNU6-815P-201ENST00000384080 113 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.505-201ENST00000384489 102 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 AC073261.1-201ENST00000429409 121 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 RBMX2P4-201ENST00000441256 376 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 HSPE1P25-201ENST00000455484 251 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 RNU6-693P-201ENST00000516134 107 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 RNU2-31P-201ENST00000516954 155 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 MIR4724-201ENST00000579485 89 ntBASIC0.06□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.390-201ENST00000383932 102 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.476-201ENST00000384347 108 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR548A2-201ENST00000384956 97 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR1302-11-201ENST00000408051 138 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR1302-9-201ENST00000408365 138 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR1302-10-201ENST00000408734 138 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 RNA5SP330-201ENST00000517096 96 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR5692C2-201ENST00000577959 77 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR1302-2-201ENST00000607096 138 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 MIR376A1-201ENST00000616574 68 ntBASIC0.05□□□□□ -2.4
PKNOX2Q96KN3 SNORD61-201ENST00000384252 73 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 RNU6-102P-201ENST00000384485 104 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.569-201ENST00000384749 103 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 SNORD12C-201ENST00000386307 89 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 RNA5SP63-201ENST00000391225 112 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 MIR1197-201ENST00000408818 88 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 MTCO2P24-201ENST00000515611 426 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 RNU6-126P-201ENST00000516685 103 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 SNORD36C-201ENST00000516733 66 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.715-201ENST00000517082 110 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 AC112693.2-201ENST00000556538 232 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 AC133485.4-201ENST00000561835 220 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 AC006157.1-201ENST00000611750 366 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.04□□□□□ -2.4
PKNOX2Q96KN3 RNU4-90P-201ENST00000362773 141 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 SNORA36.1-201ENST00000363424 132 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 SNORA72.1-201ENST00000363485 129 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.424-201ENST00000384063 103 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.445-201ENST00000384168 102 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 SNORD77.3-201ENST00000391113 65 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 MIR548I3-201ENST00000408378 149 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 Y_RNA.602-201ENST00000410535 92 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 RNU7-96P-201ENST00000459535 64 ntBASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
PKNOX2Q96KN3 RNU6-1272P-201ENST00000362776 107 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU6-888P-201ENST00000363010 101 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.85-201ENST00000363014 111 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU6-1099P-201ENST00000363533 107 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 SNORD115-46-201ENST00000390982 71 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU2-59P-201ENST00000410482 191 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU6-1190P-201ENST00000410811 104 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.631-201ENST00000459607 101 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU6-998P-201ENST00000515894 101 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 RNU6-365P-201ENST00000517113 106 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 AC131281.1-201ENST00000522984 164 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 AC100767.1-201ENST00000528178 123 ntBASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.02□□□□□ -2.41
PKNOX2Q96KN3 SNORA42.1-201ENST00000363515 137 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.183-201ENST00000363882 113 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.315-201ENST00000365117 102 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.639-201ENST00000458981 102 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 RNU2-11P-201ENST00000459191 187 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 RNU6-1270P-201ENST00000517128 108 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 MIR6718-201ENST00000616153 80 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 MIR8066-201ENST00000617280 78 ntBASIC0.01□□□□□ -2.41
PKNOX2Q96KN3 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.197-201ENST00000364004 102 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.293-201ENST00000364908 93 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 SNORA63.7-201ENST00000365579 123 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 MIR526A2-201ENST00000390198 65 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 RNA5SP127-201ENST00000411051 133 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 PMCHL1-202ENST00000423102 261 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 AL138752.1-201ENST00000452964 351 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 MTND4LP30-201ENST00000454092 297 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0□□□□□ -2.41
PKNOX2Q96KN3 RNU6-397P-201ENST00000516226 104 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 RNU6-504P-201ENST00000516568 104 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 AP003733.2-201ENST00000529409 171 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 MIR5688-201ENST00000580619 83 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 RAC1P9-201ENST00000604990 392 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 AC007485.1-201ENST00000616755 206 ntBASIC0□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.01□□□□□ -2.41
PKNOX2Q96KN3 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.01□□□□□ -2.41
PKNOX2Q96KN3 RNU6-740P-201ENST00000364734 105 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 250.6 ms