Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC012433.1-201ENST00000588916 398 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RMST_2.1-201ENST00000617263 136 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.326-201ENST00000365176 113 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.432-201ENST00000384087 111 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 RNU6-1160P-201ENST00000384546 104 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 SNORD38B-201ENST00000384690 67 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.572-201ENST00000384757 98 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 RNU6-177P-201ENST00000411257 104 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 SNRPGP8-201ENST00000454064 226 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 MIR18B-201ENST00000454574 71 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 RNU6-998P-201ENST00000515894 101 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 SNORD36C-201ENST00000516733 66 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 RNU6-958P-201ENST00000516995 106 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.720-201ENST00000517166 92 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 SNORD38B-202ENST00000625943 69 ntBASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
RPUSD4Q96CM3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 MIR96-201ENST00000362288 78 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 snoU2_19.4-201ENST00000364329 80 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 RNU6-934P-201ENST00000365154 107 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 RNU4-45P-201ENST00000365469 141 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.440-201ENST00000384120 114 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 RNU6-472P-201ENST00000384299 107 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.542-201ENST00000384641 111 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 MIR573-201ENST00000384964 99 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 MIR563-201ENST00000385080 79 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 RNU6-381P-201ENST00000391259 108 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 RNU4-43P-201ENST00000410628 137 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AF228730.3-201ENST00000436691 102 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AC018659.1-201ENST00000551083 169 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AL442663.2-201ENST00000554385 511 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AC133485.1-201ENST00000567176 124 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AC138907.6-201ENST00000568401 126 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 AC006504.6-201ENST00000590142 199 ntBASIC0.46□□□□□ -2.34
RPUSD4Q96CM3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.91-201ENST00000363042 107 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6-653P-201ENST00000363074 106 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.122-201ENST00000363331 96 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6-1189P-201ENST00000383958 107 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.574-201ENST00000384766 95 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 MT-TW-201ENST00000387382 68 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6-205P-201ENST00000390858 107 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 SNORD77.3-201ENST00000391113 65 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 AL603825.1-201ENST00000438481 80 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU7-62P-201ENST00000458856 62 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 snoU13.21-201ENST00000459368 105 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6-1153P-201ENST00000516760 105 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 RNU6-1270P-201ENST00000517128 108 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 AP003072.1-201ENST00000531740 145 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.352-201ENST00000365439 102 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RNU6-1292P-201ENST00000383856 107 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 MIR520E-201ENST00000384867 87 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AL606845.1-201ENST00000404881 255 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 MIR548I3-201ENST00000408378 149 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 MIR1302-6-201ENST00000408466 90 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RNU2-70P-201ENST00000410718 179 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RNU6-651P-201ENST00000411040 105 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RNU6-602P-201ENST00000411155 105 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 snoU13.2-201ENST00000459201 104 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.638-201ENST00000459374 113 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RN7SKP12-201ENST00000516275 143 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 RNU6-635P-201ENST00000516651 102 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AC004812.1-201ENST00000540773 146 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AL117187.1-201ENST00000555482 181 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AC011195.1-201ENST00000578177 177 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 MIR4804-201ENST00000581683 73 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 MIR6740-201ENST00000618268 113 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 AL365265.1-201ENST00000621045 234 ntBASIC0.44□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.145-201ENST00000363527 102 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 RNU6-103P-201ENST00000363686 107 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 SNORA1.1-201ENST00000364671 133 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 RNU1-93P-201ENST00000364704 169 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.483-201ENST00000384380 101 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 MT-TT-201ENST00000387460 66 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.590-201ENST00000410140 107 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 CYP3A137P-201ENST00000562436 69 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 AL365205.2-201ENST00000594586 68 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 AC011921.3-201ENST00000605540 361 ntBASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
RPUSD4Q96CM3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNU4-17P-201ENST00000365598 141 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.461-201ENST00000384263 103 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 MT-TF-201ENST00000387314 71 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 SNORA26.6-201ENST00000391256 115 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 SNORD83.1-201ENST00000411362 77 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNU7-56P-201ENST00000458744 62 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNU6-977P-201ENST00000516411 103 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNA5SP121-201ENST00000516537 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 RNU6-453P-201ENST00000516819 85 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 247.8 ms