Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR103A2-201ENST00000362154 78 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 MIR378A-201ENST00000362177 66 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 Y_RNA.272-201ENST00000364696 102 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 RNA5SP190-201ENST00000365222 118 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 RNU6-597P-201ENST00000365620 102 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 snoU13.31-201ENST00000607291 104 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 MIR6844-201ENST00000637122 62 ntBASIC1.87□□□□□ -2.11
SF3A1Q15459 Y_RNA.440-201ENST00000384120 114 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 SNORA17.3-201ENST00000391159 129 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 RNU6-1054P-201ENST00000411293 104 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 AC009474.2-201ENST00000451383 136 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 RNU2-13P-201ENST00000515909 113 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 RNU7-70P-201ENST00000516941 66 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 MTND1P7-201ENST00000632801 297 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 MIR376A2-201ENST00000636782 80 ntBASIC1.86□□□□□ -2.11
SF3A1Q15459 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SF3A1Q15459 Y_RNA.226-201ENST00000364337 114 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 Y_RNA.441-201ENST00000384123 112 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 RNU6-910P-201ENST00000390844 107 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 snoU13.25-201ENST00000458945 104 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 RNU7-96P-201ENST00000459535 64 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.85□□□□□ -2.11
SF3A1Q15459 RNU7-53P-201ENST00000516705 60 ntBASIC1.85□□□□□ -2.11
SF3A1Q15459 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.85□□□□□ -2.11
SF3A1Q15459 RNA5SP327-201ENST00000362494 101 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 Y_RNA.351-201ENST00000365436 96 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 RNU6-886P-201ENST00000384319 105 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 MIR624-201ENST00000385217 97 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 RNU6-907P-201ENST00000390924 102 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 SNORA75.5-201ENST00000391291 81 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 AL035398.1-201ENST00000430869 322 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 DNAJC19P2-201ENST00000593340 302 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 MIR3658-201ENST00000636291 56 ntBASIC1.84□□□□□ -2.11
SF3A1Q15459 MIR302B-201ENST00000362188 73 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 RNA5SP264-201ENST00000363115 107 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 RNU6-1135P-201ENST00000411083 103 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 AC019288.1-201ENST00000557918 224 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 MIR4255-201ENST00000579351 72 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 MIR3683-201ENST00000580847 82 ntBASIC1.83□□□□□ -2.12
SF3A1Q15459 MIR337-201ENST00000362281 93 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 Y_RNA.8-201ENST00000362353 102 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 RNU6-818P-201ENST00000364837 108 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 Y_RNA.555-201ENST00000384673 110 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 BTF3P4-201ENST00000418852 495 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 RPS29P23-201ENST00000458635 123 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 RNU2-11P-201ENST00000459191 187 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 snoU13.16-201ENST00000459350 104 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 AC023790.1-201ENST00000482174 347 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 RNU6-998P-201ENST00000515894 101 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 SNORA70.22-201ENST00000517160 124 ntBASIC1.82□□□□□ -2.12
SF3A1Q15459 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.82□□□□□ -2.12
SF3A1Q15459 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SF3A1Q15459 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SF3A1Q15459 RNU6-1082P-201ENST00000364574 107 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 SNORD116-18-201ENST00000383961 92 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 SNORA24-201ENST00000384096 131 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 SNORD26-201ENST00000384147 75 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 MIR1287-201ENST00000408492 90 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 RNU7-80P-201ENST00000459562 61 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 MIR3646-201ENST00000578301 84 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 MIR548AO-201ENST00000579992 96 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.81□□□□□ -2.12
SF3A1Q15459 MIR26B-201ENST00000362251 77 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 Y_RNA.454-201ENST00000384224 113 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 PCNPP3-201ENST00000393579 471 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 RNU6-1149P-201ENST00000516810 97 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 AL022345.2-201ENST00000606307 135 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 AL596211.1-201ENST00000569873 2277 ntBASIC1.8□□□□□ -2.12
SF3A1Q15459 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SF3A1Q15459 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
SF3A1Q15459 Y_RNA.330-201ENST00000365230 109 ntBASIC1.79□□□□□ -2.12
SF3A1Q15459 RNU6-449P-201ENST00000383914 107 ntBASIC1.79□□□□□ -2.12
SF3A1Q15459 MIR548I3-201ENST00000408378 149 ntBASIC1.79□□□□□ -2.12
SF3A1Q15459 RNU6-588P-201ENST00000410281 105 ntBASIC1.79□□□□□ -2.12
SF3A1Q15459 RNU7-121P-201ENST00000516604 62 ntBASIC1.79□□□□□ -2.12
SF3A1Q15459 RNU6-804P-201ENST00000384286 107 ntBASIC1.78□□□□□ -2.12
SF3A1Q15459 SNORA25-201ENST00000384384 134 ntBASIC1.78□□□□□ -2.12
SF3A1Q15459 MIR1185-1-201ENST00000408598 86 ntBASIC1.78□□□□□ -2.12
SF3A1Q15459 RNU6-151P-201ENST00000364158 107 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 SNORA25.8-201ENST00000364831 128 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 RNU4-11P-201ENST00000365287 132 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 RNU6-1130P-201ENST00000365434 107 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 SNORA67.5-201ENST00000391036 107 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 MIR1304-201ENST00000408243 91 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 RNU6-321P-201ENST00000410912 106 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 AL591704.2-201ENST00000421658 181 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 RNU7-73P-201ENST00000458743 63 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 BX248123.2-201ENST00000606318 124 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 AC091932.4-201ENST00000623386 200 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 MTND5P32-201ENST00000560711 1802 ntBASIC1.77□□□□□ -2.13
SF3A1Q15459 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SF3A1Q15459 Y_RNA.52-201ENST00000362760 96 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 RNU1-133P-201ENST00000364867 167 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 Y_RNA.363-201ENST00000365529 113 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 SNORA80D-201ENST00000384488 135 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 RNU6-913P-201ENST00000390913 95 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 SNORA75.2-201ENST00000391138 150 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms