Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 RNA5SP437-201ENST00000517249 129 ntBASIC1.67□□□□□ -2.14
TTC3P53804 AC021506.2-201ENST00000612354 169 ntBASIC1.67□□□□□ -2.14
TTC3P53804 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
TTC3P53804 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
TTC3P53804 SNORA3A-201ENST00000364113 130 ntBASIC1.66□□□□□ -2.14
TTC3P53804 SNORA22-201ENST00000383907 134 ntBASIC1.66□□□□□ -2.14
TTC3P53804 SNORA27-201ENST00000384323 126 ntBASIC1.66□□□□□ -2.14
TTC3P53804 Y_RNA.494-201ENST00000384432 111 ntBASIC1.66□□□□□ -2.14
TTC3P53804 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.66□□□□□ -2.14
TTC3P53804 RNU6-998P-201ENST00000515894 101 ntBASIC1.66□□□□□ -2.14
TTC3P53804 RNU7-181P-201ENST00000517234 74 ntBASIC1.66□□□□□ -2.14
TTC3P53804 MIR6079-201ENST00000635807 62 ntBASIC1.66□□□□□ -2.14
TTC3P53804 MIR3914-2-201ENST00000637339 95 ntBASIC1.66□□□□□ -2.14
TTC3P53804 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.66□□□□□ -2.14
TTC3P53804 SNORA63.4-201ENST00000362763 126 ntBASIC1.66□□□□□ -2.14
TTC3P53804 Y_RNA.81-201ENST00000362997 102 ntBASIC1.66□□□□□ -2.14
TTC3P53804 Y_RNA.299-201ENST00000364973 94 ntBASIC1.66□□□□□ -2.14
TTC3P53804 SNORA2.2-201ENST00000365473 135 ntBASIC1.66□□□□□ -2.14
TTC3P53804 RNY1P6-201ENST00000384193 109 ntBASIC1.66□□□□□ -2.14
TTC3P53804 MIR518A2-201ENST00000384966 87 ntBASIC1.66□□□□□ -2.14
TTC3P53804 MIR548A3-201ENST00000385297 97 ntBASIC1.66□□□□□ -2.14
TTC3P53804 SNORD77.3-201ENST00000391113 65 ntBASIC1.66□□□□□ -2.14
TTC3P53804 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.66□□□□□ -2.14
TTC3P53804 AC087499.4-201ENST00000448505 178 ntBASIC1.66□□□□□ -2.14
TTC3P53804 RNU6-412P-201ENST00000516434 106 ntBASIC1.66□□□□□ -2.14
TTC3P53804 RNA5SP168-201ENST00000516642 112 ntBASIC1.66□□□□□ -2.14
TTC3P53804 SNORA31.17-201ENST00000516953 127 ntBASIC1.66□□□□□ -2.14
TTC3P53804 AP003484.1-201ENST00000530974 250 ntBASIC1.66□□□□□ -2.14
TTC3P53804 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.65□□□□□ -2.15
TTC3P53804 Y_RNA.116-201ENST00000363292 103 ntBASIC1.65□□□□□ -2.15
TTC3P53804 Y_RNA.118-201ENST00000363300 101 ntBASIC1.65□□□□□ -2.15
TTC3P53804 SNORD14E-201ENST00000364009 85 ntBASIC1.65□□□□□ -2.15
TTC3P53804 SNORD48-201ENST00000364953 64 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNU6-429P-201ENST00000384582 108 ntBASIC1.65□□□□□ -2.15
TTC3P53804 MIR520A-201ENST00000384862 85 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNA5SP109-201ENST00000391010 116 ntBASIC1.65□□□□□ -2.15
TTC3P53804 AL035461.1-201ENST00000421490 332 ntBASIC1.65□□□□□ -2.15
TTC3P53804 HMGN2P32-201ENST00000444648 269 ntBASIC1.65□□□□□ -2.15
TTC3P53804 Y_RNA.651-201ENST00000459380 103 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNU7-12P-201ENST00000516030 62 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNU6-240P-201ENST00000516098 97 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNU6-781P-201ENST00000516377 101 ntBASIC1.65□□□□□ -2.15
TTC3P53804 RNU7-70P-201ENST00000516941 66 ntBASIC1.65□□□□□ -2.15
TTC3P53804 AC004812.1-201ENST00000540773 146 ntBASIC1.65□□□□□ -2.15
TTC3P53804 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.65□□□□□ -2.15
TTC3P53804 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
TTC3P53804 RNU6-112P-201ENST00000363599 104 ntBASIC1.64□□□□□ -2.15
TTC3P53804 Y_RNA.191-201ENST00000363972 113 ntBASIC1.64□□□□□ -2.15
TTC3P53804 Y_RNA.281-201ENST00000364774 94 ntBASIC1.64□□□□□ -2.15
TTC3P53804 RNU6-690P-201ENST00000365242 106 ntBASIC1.64□□□□□ -2.15
TTC3P53804 Y_RNA.528-201ENST00000384575 108 ntBASIC1.64□□□□□ -2.15
TTC3P53804 U8.17-201ENST00000391292 132 ntBASIC1.64□□□□□ -2.15
TTC3P53804 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.64□□□□□ -2.15
TTC3P53804 Y_RNA.757-201ENST00000578934 114 ntBASIC1.64□□□□□ -2.15
TTC3P53804 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.64□□□□□ -2.15
TTC3P53804 MIR342-201ENST00000362212 99 ntBASIC1.64□□□□□ -2.15
TTC3P53804 SNORA24-201ENST00000384096 131 ntBASIC1.64□□□□□ -2.15
TTC3P53804 MIR194-1-201ENST00000384892 85 ntBASIC1.64□□□□□ -2.15
TTC3P53804 MIR499A-201ENST00000384903 122 ntBASIC1.64□□□□□ -2.15
TTC3P53804 MIR136-201ENST00000385207 82 ntBASIC1.64□□□□□ -2.15
TTC3P53804 RNA5SP136-201ENST00000410906 107 ntBASIC1.64□□□□□ -2.15
TTC3P53804 RNU5E-3P-201ENST00000515913 68 ntBASIC1.64□□□□□ -2.15
TTC3P53804 AC091932.4-201ENST00000623386 200 ntBASIC1.64□□□□□ -2.15
TTC3P53804 MTND5P18-201ENST00000445624 1801 ntBASIC1.64□□□□□ -2.15
TTC3P53804 SNORA63.5-201ENST00000363548 123 ntBASIC1.63□□□□□ -2.15
TTC3P53804 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
TTC3P53804 SNORA4.2-201ENST00000365313 147 ntBASIC1.62□□□□□ -2.15
TTC3P53804 Y_RNA.547-201ENST00000384654 119 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNU6-1064P-201ENST00000410626 104 ntBASIC1.62□□□□□ -2.15
TTC3P53804 PGBD4P5-201ENST00000445958 426 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNU1-123P-201ENST00000458950 160 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNU7-80P-201ENST00000459562 61 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNU7-123P-201ENST00000515911 60 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNY4P20-201ENST00000516678 93 ntBASIC1.62□□□□□ -2.15
TTC3P53804 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.62□□□□□ -2.15
TTC3P53804 AC012493.3-201ENST00000604494 112 ntBASIC1.62□□□□□ -2.15
TTC3P53804 ZNF209P-201ENST00000593450 2304 ntBASIC1.62□□□□□ -2.15
TTC3P53804 SNORA1.2-201ENST00000365189 134 ntBASIC1.62□□□□□ -2.15
TTC3P53804 MIR597-201ENST00000384968 97 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNY4P18-201ENST00000391107 89 ntBASIC1.62□□□□□ -2.15
TTC3P53804 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.62□□□□□ -2.15
TTC3P53804 RNU6-938P-201ENST00000411285 103 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RPS29P24-201ENST00000486345 171 ntBASIC1.62□□□□□ -2.15
TTC3P53804 RNU6-1116P-201ENST00000517269 99 ntBASIC1.62□□□□□ -2.15
TTC3P53804 MIR6504-201ENST00000613520 61 ntBASIC1.62□□□□□ -2.15
TTC3P53804 uc_338.20-201ENST00000621563 178 ntBASIC1.62□□□□□ -2.15
TTC3P53804 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.62□□□□□ -2.15
TTC3P53804 RNU6-997P-201ENST00000384725 107 ntBASIC1.61□□□□□ -2.15
TTC3P53804 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.61□□□□□ -2.15
TTC3P53804 RNU6-830P-201ENST00000516353 107 ntBASIC1.61□□□□□ -2.15
TTC3P53804 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.61□□□□□ -2.15
TTC3P53804 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.61□□□□□ -2.15
TTC3P53804 AL353770.2-201ENST00000620024 78 ntBASIC1.61□□□□□ -2.15
TTC3P53804 U8.5-201ENST00000364528 136 ntBASIC1.61□□□□□ -2.15
TTC3P53804 Y_RNA.537-201ENST00000384626 109 ntBASIC1.61□□□□□ -2.15
TTC3P53804 RNU6-1031P-201ENST00000384773 107 ntBASIC1.61□□□□□ -2.15
TTC3P53804 RNA5SP501-201ENST00000410990 112 ntBASIC1.61□□□□□ -2.15
TTC3P53804 AL354695.1-201ENST00000427935 228 ntBASIC1.61□□□□□ -2.15
TTC3P53804 AL035398.1-201ENST00000430869 322 ntBASIC1.61□□□□□ -2.15
TTC3P53804 AC113410.1-201ENST00000505029 247 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms