Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-1292P-201ENST00000383856 107 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU6-1062P-201ENST00000383908 107 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 Y_RNA.410-201ENST00000383992 113 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 Y_RNA.506-201ENST00000384494 102 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU6-939P-201ENST00000384634 107 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU6-1190P-201ENST00000410811 104 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU7-67P-201ENST00000459003 62 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 AC048334.1-201ENST00000477975 159 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU2-13P-201ENST00000515909 113 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNA5SP61-201ENST00000516453 100 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU7-43P-201ENST00000516554 64 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 RNU6-1212P-201ENST00000517023 104 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 MIR3133-201ENST00000583157 78 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 AL121890.5-201ENST00000620848 304 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 MTND1P7-201ENST00000632801 297 ntBASIC1.2□□□□□ -2.22
HOXA1P49639 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
HOXA1P49639 SNORD115-34-201ENST00000362441 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-12-201ENST00000362583 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD33-201ENST00000362761 85 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-29-201ENST00000362834 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-9-201ENST00000362912 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-21-201ENST00000362963 81 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-14-201ENST00000363090 81 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-13-201ENST00000363358 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-41-201ENST00000363608 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-11-201ENST00000363616 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-5-201ENST00000363633 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-39-201ENST00000363694 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-4-201ENST00000363810 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-16-201ENST00000363887 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-6-201ENST00000363942 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 Y_RNA.215-201ENST00000364204 112 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-42-201ENST00000364273 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 Y_RNA.251-201ENST00000364551 99 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-15-201ENST00000364809 81 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-1-201ENST00000364961 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-26-201ENST00000365067 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-10-201ENST00000365073 81 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 Y_RNA.351-201ENST00000365436 96 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-43-201ENST00000365503 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-36-201ENST00000365629 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD26-201ENST00000384147 75 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORA51.10-201ENST00000384418 136 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 RNU6-125P-201ENST00000384505 107 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 RNU6-913P-201ENST00000390913 95 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORA40.5-201ENST00000391061 128 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 HMGN1P33-201ENST00000432945 451 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 AC245517.4-201ENST00000448601 281 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 AC009474.2-201ENST00000451383 136 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 RNU7-197P-201ENST00000458836 62 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 RPS29P24-201ENST00000486345 171 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.19□□□□□ -2.22
HOXA1P49639 RNU6-426P-201ENST00000516464 97 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 MIR548AO-201ENST00000579992 96 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SNORD115-40-201ENST00000606510 82 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 MIR4251-201ENST00000635819 61 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 AL596211.1-201ENST00000569873 2277 ntBASIC1.19□□□□□ -2.22
HOXA1P49639 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXA1P49639 SNORA1.2-201ENST00000365189 134 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 Y_RNA.400-201ENST00000383963 111 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 RNU6-187P-201ENST00000384139 106 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 MIR569-201ENST00000385228 96 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 SNORA67.6-201ENST00000391093 99 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 MIR1323-201ENST00000408090 73 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXA1P49639 AC090844.1-201ENST00000422019 156 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 SUMO1P3-201ENST00000439961 304 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 RPS29P29-201ENST00000456396 171 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 RNU2-11P-201ENST00000459191 187 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 RN7SKP179-201ENST00000516126 217 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXA1P49639 MIR3646-201ENST00000578301 84 ntBASIC1.18□□□□□ -2.22
HOXA1P49639 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXA1P49639 AL354695.1-201ENST00000427935 228 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 RPL39P39-201ENST00000455840 151 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 RPL30P7-201ENST00000479312 323 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 RNU6-998P-201ENST00000515894 101 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 RNU5E-3P-201ENST00000515913 68 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 SNORA31.2-201ENST00000516019 134 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 SNORA31.24-201ENST00000517232 57 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 AC131055.1-201ENST00000584626 316 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 AL357312.1-201ENST00000603879 298 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 AC091932.4-201ENST00000623386 200 ntBASIC1.17□□□□□ -2.22
HOXA1P49639 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
HOXA1P49639 RNU4-16P-201ENST00000364737 141 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 Y_RNA.363-201ENST00000365529 113 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 Y_RNA.420-201ENST00000384043 110 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 Y_RNA.584-201ENST00000391090 114 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 MIR1302-7-201ENST00000408841 72 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXA1P49639 AC107297.1-201ENST00000459991 176 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXA1P49639 MIR548X2-201ENST00000579776 100 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 AC104984.5-201ENST00000586878 94 ntBASIC1.16□□□□□ -2.22
HOXA1P49639 RNU6-309P-201ENST00000364573 106 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 Y_RNA.294-201ENST00000364916 102 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 RNA5SP190-201ENST00000365222 118 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 SNORA24-201ENST00000384096 131 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 Y_RNA.488-201ENST00000384403 102 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 Y_RNA.537-201ENST00000384626 109 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms