Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-102P-201ENST00000384485 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 MIR125B2-201ENST00000385128 89 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-1319P-201ENST00000390855 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-747P-201ENST00000390928 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-241P-201ENST00000391148 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-447P-201ENST00000410293 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-1118P-201ENST00000410382 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-1076P-201ENST00000410397 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-355P-201ENST00000410427 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-791P-201ENST00000410467 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-705P-201ENST00000410601 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-1100P-201ENST00000410691 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-860P-201ENST00000410860 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-1217P-201ENST00000411276 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 SNORD71-201ENST00000411292 86 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-785P-201ENST00000411324 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 MTCO2P24-201ENST00000515611 426 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU2-31P-201ENST00000516954 155 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-897P-201ENST00000517135 105 ntBASIC0.22□□□□□ -2.37
RFX3P48380 Y_RNA.721-201ENST00000517207 102 ntBASIC0.22□□□□□ -2.37
RFX3P48380 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.22□□□□□ -2.37
RFX3P48380 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
RFX3P48380 U6.90-201ENST00000614007 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 MIR6740-201ENST00000618268 113 ntBASIC0.22□□□□□ -2.37
RFX3P48380 AL109933.3-201ENST00000619095 188 ntBASIC0.22□□□□□ -2.37
RFX3P48380 U6.70-201ENST00000620287 104 ntBASIC0.22□□□□□ -2.37
RFX3P48380 MIR103A1-201ENST00000362165 78 ntBASIC0.21□□□□□ -2.38
RFX3P48380 SNORA1.1-201ENST00000364671 133 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-514P-201ENST00000384208 107 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-364P-201ENST00000384387 107 ntBASIC0.21□□□□□ -2.38
RFX3P48380 Y_RNA.486-201ENST00000384398 107 ntBASIC0.21□□□□□ -2.38
RFX3P48380 MT-TF-201ENST00000387314 71 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-913P-201ENST00000390913 95 ntBASIC0.21□□□□□ -2.38
RFX3P48380 SNORA53-201ENST00000391141 249 ntBASIC0.21□□□□□ -2.38
RFX3P48380 SNORA26-201ENST00000391286 122 ntBASIC0.21□□□□□ -2.38
RFX3P48380 MIR1252-201ENST00000408861 65 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-1165P-201ENST00000410119 107 ntBASIC0.21□□□□□ -2.38
RFX3P48380 SNORA40.8-201ENST00000411034 126 ntBASIC0.21□□□□□ -2.38
RFX3P48380 Y_RNA.639-201ENST00000458981 102 ntBASIC0.21□□□□□ -2.38
RFX3P48380 snoU13.2-201ENST00000459201 104 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-693P-201ENST00000516134 107 ntBASIC0.21□□□□□ -2.38
RFX3P48380 RNU6-365P-201ENST00000517113 106 ntBASIC0.21□□□□□ -2.38
RFX3P48380 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.21□□□□□ -2.38
RFX3P48380 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.21□□□□□ -2.38
RFX3P48380 AC010332.2-201ENST00000613083 1904 ntBASIC0.21□□□□□ -2.38
RFX3P48380 SNORA25.1-201ENST00000362326 128 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU6-888P-201ENST00000363010 101 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU4-73P-201ENST00000363164 141 ntBASIC0.2□□□□□ -2.38
RFX3P48380 Y_RNA.293-201ENST00000364908 93 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR588-201ENST00000384900 83 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR518F-201ENST00000384973 87 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR518A1-201ENST00000385068 85 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR1257-201ENST00000408490 117 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU2-70P-201ENST00000410718 179 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU6-938P-201ENST00000411285 103 ntBASIC0.2□□□□□ -2.38
RFX3P48380 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.2□□□□□ -2.38
RFX3P48380 PMCHL1-202ENST00000423102 261 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU7-185P-201ENST00000459215 60 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU7-96P-201ENST00000459535 64 ntBASIC0.2□□□□□ -2.38
RFX3P48380 Y_RNA.631-201ENST00000459607 101 ntBASIC0.2□□□□□ -2.38
RFX3P48380 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.2□□□□□ -2.38
RFX3P48380 SNORA25.12-201ENST00000516202 82 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU6-397P-201ENST00000516226 104 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RNU6-504P-201ENST00000516568 104 ntBASIC0.2□□□□□ -2.38
RFX3P48380 AP003733.2-201ENST00000529409 171 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR548S-201ENST00000581352 82 ntBASIC0.2□□□□□ -2.38
RFX3P48380 MIR4795-201ENST00000584182 89 ntBASIC0.2□□□□□ -2.38
RFX3P48380 SNORD92-201ENST00000585078 85 ntBASIC0.2□□□□□ -2.38
RFX3P48380 RAC1P9-201ENST00000604990 392 ntBASIC0.2□□□□□ -2.38
RFX3P48380 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.19□□□□□ -2.38
RFX3P48380 Y_RNA.380-201ENST00000365663 111 ntBASIC0.19□□□□□ -2.38
RFX3P48380 MIR548A2-201ENST00000384956 97 ntBASIC0.19□□□□□ -2.38
RFX3P48380 MIR563-201ENST00000385080 79 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU6-823P-201ENST00000391042 103 ntBASIC0.19□□□□□ -2.38
RFX3P48380 SNORD77.3-201ENST00000391113 65 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNA5SP63-201ENST00000391225 112 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU6-101P-201ENST00000410323 104 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU6-602P-201ENST00000411155 105 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU7-102P-201ENST00000458948 62 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU6-863P-201ENST00000515989 104 ntBASIC0.19□□□□□ -2.38
RFX3P48380 RNU6-507P-201ENST00000516045 100 ntBASIC0.19□□□□□ -2.38
RFX3P48380 AC100767.1-201ENST00000528178 123 ntBASIC0.19□□□□□ -2.38
RFX3P48380 AC022523.2-201ENST00000561045 150 ntBASIC0.19□□□□□ -2.38
RFX3P48380 MIR4514-201ENST00000581410 57 ntBASIC0.19□□□□□ -2.38
RFX3P48380 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
RFX3P48380 Y_RNA.802-201ENST00000614892 130 ntBASIC0.19□□□□□ -2.38
RFX3P48380 SNORD44.1-201ENST00000363202 61 ntBASIC0.18□□□□□ -2.38
RFX3P48380 SNORD42.2-201ENST00000365570 69 ntBASIC0.18□□□□□ -2.38
RFX3P48380 Y_RNA.410-201ENST00000383992 113 ntBASIC0.18□□□□□ -2.38
RFX3P48380 RNU6-679P-201ENST00000391003 106 ntBASIC0.18□□□□□ -2.38
RFX3P48380 Y_RNA.645-201ENST00000391229 102 ntBASIC0.18□□□□□ -2.38
RFX3P48380 MIR1197-201ENST00000408818 88 ntBASIC0.18□□□□□ -2.38
RFX3P48380 RNU2-55P-201ENST00000411146 174 ntBASIC0.18□□□□□ -2.38
RFX3P48380 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.18□□□□□ -2.38
RFX3P48380 SNORA27.4-201ENST00000516650 95 ntBASIC0.18□□□□□ -2.38
RFX3P48380 RNA5SP94-201ENST00000516917 108 ntBASIC0.18□□□□□ -2.38
RFX3P48380 RNU7-156P-201ENST00000517214 74 ntBASIC0.18□□□□□ -2.38
RFX3P48380 AP003327.1-201ENST00000529684 127 ntBASIC0.18□□□□□ -2.38
RFX3P48380 Y_RNA.217-201ENST00000364214 105 ntBASIC0.17□□□□□ -2.38
RFX3P48380 RNU4-67P-201ENST00000364569 141 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms