Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 Y_RNA.180-201ENST00000363867 113 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 SNORD115-28-201ENST00000363931 81 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 Y_RNA.272-201ENST00000364696 102 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 RNU6-818P-201ENST00000364837 108 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 Y_RNA.338-201ENST00000365320 114 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 RNU6-804P-201ENST00000384286 107 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 RNU6-768P-201ENST00000384683 107 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 RNU6-239P-201ENST00000390990 99 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 SNORD77.3-201ENST00000391113 65 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 MRPL35P3-201ENST00000421557 364 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 AC005840.1-201ENST00000498412 377 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 SNORD116-25-201ENST00000516517 92 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 MIR3129-201ENST00000581095 76 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 AL357312.1-201ENST00000603879 298 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 MIR376A2-201ENST00000636782 80 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
HNF4AP41235 AL391516.1-201ENST00000554380 2449 ntBASIC1.14□□□□□ -2.23
HNF4AP41235 Y_RNA.327-201ENST00000365201 102 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 Y_RNA.521-201ENST00000384560 114 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
HNF4AP41235 RNU6-910P-201ENST00000390844 107 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 RNU6-1054P-201ENST00000411293 104 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 AL591704.2-201ENST00000421658 181 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.13□□□□□ -2.23
HNF4AP41235 AC107027.2-201ENST00000512197 115 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 AC108729.3-201ENST00000513484 108 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 SNORD36C-201ENST00000516733 66 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 MIR6078-201ENST00000611069 100 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 AC134878.1-201ENST00000619901 243 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 MIR3658-201ENST00000636291 56 ntBASIC1.13□□□□□ -2.23
HNF4AP41235 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.13□□□□□ -2.23
HNF4AP41235 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
HNF4AP41235 RNU6-1082P-201ENST00000364574 107 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 RNU6-1130P-201ENST00000365434 107 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 MIR570-201ENST00000384917 97 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 SNORD12-201ENST00000391002 90 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 RPL39P39-201ENST00000455840 151 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 UBL5P1-201ENST00000507979 193 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 MIR3144-201ENST00000579460 79 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 MIR3192-201ENST00000584920 77 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 AC091895.1-201ENST00000624494 256 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 AC021753.1-201ENST00000635724 168 ntBASIC1.12□□□□□ -2.23
HNF4AP41235 Y_RNA.8-201ENST00000362353 102 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 RNY1P11-201ENST00000363759 113 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 Y_RNA.337-201ENST00000365312 102 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 RNU6-597P-201ENST00000365620 102 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 Y_RNA.393-201ENST00000383936 102 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 RNU6-209P-201ENST00000384118 107 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 MIR19B1-201ENST00000384829 87 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 MIR520C-201ENST00000385005 87 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
HNF4AP41235 AC245047.7-201ENST00000440265 293 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 snoU13.25-201ENST00000458945 104 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 AC048334.1-201ENST00000477975 159 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 RPS26P48-201ENST00000491713 339 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 AP003484.1-201ENST00000530974 250 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 MIR4764-201ENST00000580680 88 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 AL365205.2-201ENST00000594586 68 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 AL096861.1-201ENST00000610899 123 ntBASIC1.11□□□□□ -2.23
HNF4AP41235 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
HNF4AP41235 Y_RNA.370-201ENST00000365589 108 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU6-1292P-201ENST00000383856 107 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 Y_RNA.398-201ENST00000383952 99 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 Y_RNA.580-201ENST00000391004 95 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU6-588P-201ENST00000410281 105 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 AC063976.4-201ENST00000421971 163 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 AC087499.4-201ENST00000448505 178 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU2-13P-201ENST00000515909 113 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU7-41P-201ENST00000515917 61 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU6-947P-201ENST00000516264 106 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 SNORA18.4-201ENST00000516440 124 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 RNU6-255P-201ENST00000516957 105 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 MTND5P41-201ENST00000517498 206 ntBASIC1.1□□□□□ -2.23
HNF4AP41235 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.1□□□□□ -2.23
HNF4AP41235 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
HNF4AP41235 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
HNF4AP41235 SNORA25.7-201ENST00000364375 127 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 Y_RNA.241-201ENST00000364470 117 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 RNU6-1189P-201ENST00000383958 107 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 Y_RNA.410-201ENST00000383992 113 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 Y_RNA.464-201ENST00000384282 110 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 Y_RNA.542-201ENST00000384641 111 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.09□□□□□ -2.23
HNF4AP41235 RNU7-43P-201ENST00000516554 64 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 MIR4498-201ENST00000577599 66 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.09□□□□□ -2.23
HNF4AP41235 MIR4661-201ENST00000582720 75 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 DNAJC19P2-201ENST00000593340 302 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 AL359821.1-201ENST00000605519 182 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 MIR6844-201ENST00000637122 62 ntBASIC1.09□□□□□ -2.23
HNF4AP41235 Y_RNA.440-201ENST00000384120 114 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 SNORA40.5-201ENST00000391061 128 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 RPS29P28-201ENST00000446439 141 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 SNORD111.1-201ENST00000516421 86 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 MIR4791-201ENST00000607666 84 ntBASIC1.08□□□□□ -2.24
HNF4AP41235 SNORD115-34-201ENST00000362441 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-12-201ENST00000362583 82 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms