Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Y_RNA.455-201ENST00000384230 98 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORD61-201ENST00000384252 73 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
SHMT2P34897 RPS29P24-201ENST00000486345 171 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 AL117351.2-201ENST00000513571 157 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 RNU6-693P-201ENST00000516134 107 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORA27.4-201ENST00000516650 95 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORD36C-201ENST00000516733 66 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 Y_RNA.711-201ENST00000516993 102 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 MIR3612-201ENST00000579753 87 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 AC113195.1-201ENST00000579952 141 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 MIR8055-201ENST00000610739 97 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 Y_RNA.802-201ENST00000614892 130 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 PVT1_3.1-201ENST00000620853 95 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 snoU18.1-201ENST00000629629 71 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 AC010332.2-201ENST00000613083 1904 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 UBE2WP1-201ENST00000362030 340 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 RNU6-888P-201ENST00000363010 101 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 Y_RNA.210-201ENST00000364161 110 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 VTRNA1-3-201ENST00000365645 89 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 SNORA27-201ENST00000384323 126 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 HMGN1P33-201ENST00000432945 451 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 RNY3P15-201ENST00000516297 97 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 RNU7-53P-201ENST00000516705 60 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 RNU6-1270P-201ENST00000517128 108 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 Z83818.1-201ENST00000603584 150 ntBASIC0.36□□□□□ -2.35
SHMT2P34897 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.66-201ENST00000362862 102 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.128-201ENST00000363391 112 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.138-201ENST00000363462 102 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.158-201ENST00000363651 101 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 RNU4-45P-201ENST00000365469 141 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.460-201ENST00000384255 102 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.527-201ENST00000384573 102 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 SNORD38B-201ENST00000384690 67 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 AL731563.1-201ENST00000442202 214 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.35□□□□□ -2.35
SHMT2P34897 RNU7-56P-201ENST00000458744 62 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 RNU6-126P-201ENST00000516685 103 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 AP003733.2-201ENST00000529409 171 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 MIR5688-201ENST00000580619 83 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.35□□□□□ -2.35
SHMT2P34897 SNORD38B-202ENST00000625943 69 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.35□□□□□ -2.35
SHMT2P34897 AC134503.1-201ENST00000633048 54 ntBASIC0.35□□□□□ -2.35
SHMT2P34897 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
SHMT2P34897 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.35□□□□□ -2.35
SHMT2P34897 Y_RNA.229-201ENST00000364347 113 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 RNU6-342P-201ENST00000384521 104 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 Y_RNA.572-201ENST00000384757 98 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 MIR216A-201ENST00000385063 110 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 MIR548P-201ENST00000408336 84 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 RNU6-602P-201ENST00000411155 105 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 MTND4LP11-201ENST00000422184 280 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 AC100767.1-201ENST00000528178 123 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.34□□□□□ -2.36
SHMT2P34897 MIR4680-201ENST00000580906 66 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 AC006006.1-201ENST00000603082 144 ntBASIC0.34□□□□□ -2.36
SHMT2P34897 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.33□□□□□ -2.36
SHMT2P34897 Y_RNA.64-201ENST00000362845 102 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 SNORD114-23-201ENST00000363536 72 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 SNORA1.1-201ENST00000364671 133 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 SNORA8.3-201ENST00000384679 139 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 MIR548I3-201ENST00000408378 149 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 RNU6-1165P-201ENST00000410119 107 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 RNU6-1190P-201ENST00000410811 104 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 MIR18B-201ENST00000454574 71 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 MTND5P22-201ENST00000458380 195 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.33□□□□□ -2.36
SHMT2P34897 SERF1AP1-201ENST00000514575 187 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 RNU6-365P-201ENST00000517113 106 ntBASIC0.33□□□□□ -2.36
SHMT2P34897 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
SHMT2P34897 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.24-201ENST00000362508 103 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.84-201ENST00000363011 104 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.91-201ENST00000363042 107 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.153-201ENST00000363615 91 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.216-201ENST00000364205 93 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 RNU6-484P-201ENST00000384016 107 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 RNU6-211P-201ENST00000384047 107 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 Y_RNA.535-201ENST00000384612 99 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 MIR588-201ENST00000384900 83 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 MIR563-201ENST00000385080 79 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 MIR938-201ENST00000401216 83 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 snoU13.2-201ENST00000459201 104 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 RNU6-998P-201ENST00000515894 101 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 RNU6-1143P-201ENST00000516125 104 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.32□□□□□ -2.36
SHMT2P34897 AP001094.1-201ENST00000579805 193 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 AC008608.1-201ENST00000603910 127 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 AL162730.1-201ENST00000605734 292 ntBASIC0.32□□□□□ -2.36
SHMT2P34897 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.31□□□□□ -2.36
SHMT2P34897 Y_RNA.275-201ENST00000364726 110 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 MIR626-201ENST00000385032 94 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 MIR613-201ENST00000385248 95 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 AF228730.3-201ENST00000436691 102 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 RNU7-96P-201ENST00000459535 64 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 RNU6-1338P-201ENST00000516328 91 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 RNU6-504P-201ENST00000516568 104 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 184.9 ms