Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU6-693P-201ENST00000516134 107 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.22□□□□□ -2.6
SDC4P31431 AC087752.4-201ENST00000605911 462 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 MIR6851-201ENST00000617060 67 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 uc_338.10-201ENST00000621872 182 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 U6.109-201ENST00000636749 87 ntBASIC-1.22□□□□□ -2.6
SDC4P31431 RNU1-141P-201ENST00000364623 158 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 SNORA18-201ENST00000384416 132 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 SNORA26.8-201ENST00000391306 124 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 RNU6-710P-201ENST00000410424 105 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 RNA5SP25-201ENST00000410815 110 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 MTND2P9-201ENST00000422293 931 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.23□□□□□ -2.61
SDC4P31431 AC005357.1-201ENST00000588399 301 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 DEFB117-201ENST00000602356 141 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 AC079248.2-201ENST00000623779 326 ntBASIC-1.23□□□□□ -2.61
SDC4P31431 RNU4-36P-201ENST00000364294 144 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 Y_RNA.486-201ENST00000384398 107 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 RNU6-831P-201ENST00000384548 107 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 AF228730.3-201ENST00000436691 102 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 RNU7-141P-201ENST00000459304 62 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 RNU6-1170P-201ENST00000515974 106 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 RNU6-1270P-201ENST00000517128 108 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 AP000676.1-201ENST00000533307 52 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 MIR4528-201ENST00000577763 90 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 Y_RNA.757-201ENST00000578934 114 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 MIR3920-201ENST00000581751 86 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 AC073648.5-201ENST00000603502 305 ntBASIC-1.24□□□□□ -2.61
SDC4P31431 RNY1P2-201ENST00000364820 117 ntBASIC-1.25□□□□□ -2.61
SDC4P31431 Y_RNA.440-201ENST00000384120 114 ntBASIC-1.25□□□□□ -2.61
SDC4P31431 SNORD61-201ENST00000384252 73 ntBASIC-1.25□□□□□ -2.61
SDC4P31431 AL603914.1-201ENST00000401964 204 ntBASIC-1.25□□□□□ -2.61
SDC4P31431 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-1.25□□□□□ -2.61
SDC4P31431 MIR3942-201ENST00000585264 109 ntBASIC-1.25□□□□□ -2.61
SDC4P31431 RNU4-28P-201ENST00000364739 141 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 SNORD115-44-201ENST00000365391 82 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 Y_RNA.430-201ENST00000384081 110 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 RNU6-900P-201ENST00000384498 102 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 snoU13.13-201ENST00000458842 104 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 RNU6-138P-201ENST00000515952 107 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 YWHAEP2-201ENST00000580066 112 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 AL049861.1-201ENST00000603130 150 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MIR1244-1-201ENST00000612829 85 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 AC011476.5-201ENST00000615594 130 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MIR1244-3-201ENST00000635744 85 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MIR1244-2-201ENST00000636449 85 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MIR1244-4-202ENST00000636813 85 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MTND5P18-201ENST00000445624 1801 ntBASIC-1.26□□□□□ -2.61
SDC4P31431 MIR302B-201ENST00000362188 73 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 SNORD114-29-201ENST00000364819 70 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 MIR599-201ENST00000385069 95 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 RNA5SP395-201ENST00000516567 118 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 SNORA27.4-201ENST00000516650 95 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 RNU6-273P-201ENST00000516937 96 ntBASIC-1.27□□□□□ -2.61
SDC4P31431 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.27□□□□□ -2.61
SDC4P31431 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.27□□□□□ -2.61
SDC4P31431 Y_RNA.38-201ENST00000362617 102 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-1.28□□□□□ -2.61
SDC4P31431 SNORD5.1-201ENST00000458800 75 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-1.28□□□□□ -2.61
SDC4P31431 IGKV1-22-201ENST00000524313 326 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 MIR3145-201ENST00000580727 82 ntBASIC-1.28□□□□□ -2.61
SDC4P31431 Y_RNA.119-201ENST00000363301 96 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 Y_RNA.294-201ENST00000364916 102 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 RNU6-1138P-201ENST00000365359 106 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 RNU6-154P-201ENST00000384306 106 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR620-201ENST00000385232 95 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-1.29□□□□□ -2.62
SDC4P31431 TRAJ51-201ENST00000504127 63 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.29□□□□□ -2.62
SDC4P31431 MIR3179-1-201ENST00000578940 84 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR3179-2-201ENST00000579107 84 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR3179-3-201ENST00000579566 84 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR6128-201ENST00000615528 109 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR3179-4-201ENST00000617599 84 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 MIR6841-201ENST00000637129 72 ntBASIC-1.29□□□□□ -2.62
SDC4P31431 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-1.3□□□□□ -2.62
SDC4P31431 SNORD81.1-201ENST00000363064 77 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 Y_RNA.366-201ENST00000365540 102 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 RNU6-449P-201ENST00000383914 107 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 MIR517B-201ENST00000385102 67 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 RNU6-383P-201ENST00000410864 94 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 MTND1P14-201ENST00000427400 950 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-1.3□□□□□ -2.62
SDC4P31431 RNU7-79P-201ENST00000516082 62 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 AL021707.8-201ENST00000609428 183 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 uc_338.19-201ENST00000616808 99 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 U4.1-201ENST00000620349 87 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 MIR376A2-201ENST00000636782 80 ntBASIC-1.3□□□□□ -2.62
SDC4P31431 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.31□□□□□ -2.62
SDC4P31431 RNA5SP261-201ENST00000410536 106 ntBASIC-1.31□□□□□ -2.62
SDC4P31431 RNU5E-9P-201ENST00000411164 104 ntBASIC-1.31□□□□□ -2.62
SDC4P31431 AC074085.1-201ENST00000413598 418 ntBASIC-1.31□□□□□ -2.62
SDC4P31431 SNORD22.1-201ENST00000516331 125 ntBASIC-1.31□□□□□ -2.62
SDC4P31431 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.31□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms