Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORA2.2-201ENST00000365473 135 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 MIR452-201ENST00000385020 85 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 MIR660-201ENST00000385235 97 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 SNORA40.5-201ENST00000391061 128 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 PGBD4P5-201ENST00000445958 426 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 SNORD36C-201ENST00000516733 66 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 MIR4303-201ENST00000581299 66 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 uc_338.20-201ENST00000621563 178 ntBASIC1.68□□□□□ -2.14
HOXD9P28356 MIR424-201ENST00000362227 98 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 RNU6-215P-201ENST00000365169 102 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 SNORD58C-201ENST00000365223 64 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 RNU6-439P-201ENST00000384188 106 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 MIR30A-201ENST00000385092 71 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 SNORA67.5-201ENST00000391036 107 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 HMGN2P38-201ENST00000423806 265 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 RNU7-34P-201ENST00000459394 64 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 RN7SKP19-201ENST00000516016 252 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.67□□□□□ -2.14
HOXD9P28356 U6.95-201ENST00000636931 70 ntBASIC1.67□□□□□ -2.14
HOXD9P28356 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
HOXD9P28356 MTATP6P29-201ENST00000415057 132 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXD9P28356 IGKV1-22-201ENST00000524313 326 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 AC133485.4-201ENST00000561835 220 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 AC138907.4-201ENST00000570107 226 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 AC108081.1-201ENST00000604358 221 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 MIR8074-201ENST00000615081 81 ntBASIC1.66□□□□□ -2.14
HOXD9P28356 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.65□□□□□ -2.14
HOXD9P28356 SNORD115-34-201ENST00000362441 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-12-201ENST00000362583 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-29-201ENST00000362834 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-9-201ENST00000362912 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-21-201ENST00000362963 81 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-14-201ENST00000363090 81 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-13-201ENST00000363358 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-41-201ENST00000363608 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-11-201ENST00000363616 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-5-201ENST00000363633 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-39-201ENST00000363694 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 RNU6-414P-201ENST00000363705 104 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-4-201ENST00000363810 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-16-201ENST00000363887 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-6-201ENST00000363942 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-42-201ENST00000364273 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-15-201ENST00000364809 81 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-1-201ENST00000364961 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-26-201ENST00000365067 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-10-201ENST00000365073 81 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-43-201ENST00000365503 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-36-201ENST00000365629 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 RNU6-1056P-201ENST00000383996 107 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD20-201ENST00000384550 80 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 MIR194-1-201ENST00000384892 85 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 MIR136-201ENST00000385207 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 Y_RNA.630-201ENST00000411370 108 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 AC093850.1-201ENST00000454121 251 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 RNU7-80P-201ENST00000459562 61 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 AC008834.1-201ENST00000511612 175 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 RNU5E-3P-201ENST00000515913 68 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORA18.7-201ENST00000516910 131 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD115-40-201ENST00000606510 82 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 SNORD3E-202ENST00000627253 216 ntBASIC1.65□□□□□ -2.15
HOXD9P28356 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
HOXD9P28356 RNU6-1123P-201ENST00000362347 106 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 RNU6-349P-201ENST00000362402 107 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 Y_RNA.351-201ENST00000365436 96 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 Y_RNA.454-201ENST00000384224 113 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 U8.17-201ENST00000391292 132 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 RNU4-62P-201ENST00000410125 130 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 RNU6-1064P-201ENST00000410626 104 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 RNU6-781P-201ENST00000516377 101 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 RNU6-1061P-201ENST00000516530 99 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 MIR3198-2-201ENST00000577868 80 ntBASIC1.64□□□□□ -2.15
HOXD9P28356 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HOXD9P28356 Y_RNA.81-201ENST00000362997 102 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 RNU6-1325P-201ENST00000364905 105 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 SNORA1.2-201ENST00000365189 134 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 Y_RNA.346-201ENST00000365385 112 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 RNU6-1144P-201ENST00000384247 104 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 SNORA27-201ENST00000384323 126 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 MIR526A1-201ENST00000384897 85 ntBASIC1.63□□□□□ -2.15
HOXD9P28356 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD9P28356 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
HOXD9P28356 Y_RNA.241-201ENST00000364470 117 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU1-133P-201ENST00000364867 167 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 Y_RNA.494-201ENST00000384432 111 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU6-476P-201ENST00000384726 107 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 MIR516B2-201ENST00000385190 85 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 MIR1267-201ENST00000408723 78 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNA5SP136-201ENST00000410906 107 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 AL161935.2-201ENST00000414627 60 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU7-96P-201ENST00000459535 64 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU6-998P-201ENST00000515894 101 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU2-13P-201ENST00000515909 113 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 RNU7-70P-201ENST00000516941 66 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 MIR4778-201ENST00000577635 80 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 BX248123.2-201ENST00000606318 124 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 AC025166.1-201ENST00000612411 163 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 AL137067.1-201ENST00000615933 120 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms