Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL021707.8-201ENST00000609428 183 ntBASIC-0.64□□□□□ -2.51
LIMS3P0CW19 RNU6-801P-201ENST00000364087 105 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 RNY3P11-201ENST00000364153 102 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 RNA5SP285-201ENST00000516619 119 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 RNU7-110P-201ENST00000516891 62 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 AL133255.1-201ENST00000606374 441 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 MIR6717-201ENST00000622747 73 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 AL596211.1-201ENST00000569873 2277 ntBASIC-0.65□□□□□ -2.51
LIMS3P0CW19 RNU6-899P-201ENST00000363947 107 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 SNORD24-201ENST00000383884 75 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 Y_RNA.436-201ENST00000384097 102 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 SNORA32.3-201ENST00000384772 121 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 SNORA75.1-201ENST00000391130 148 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 RNA5SP300-201ENST00000391197 107 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 MTND4LP11-201ENST00000422184 280 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 AL160004.2-201ENST00000432935 350 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 RNA5SP480-201ENST00000516840 109 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 RNU6-1213P-201ENST00000517075 94 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 MIR6514-201ENST00000622549 70 ntBASIC-0.66□□□□□ -2.52
LIMS3P0CW19 SNORA8.3-201ENST00000384679 139 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 SNORA26.6-201ENST00000391256 115 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 Y_RNA.599-201ENST00000410489 109 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.67□□□□□ -2.52
LIMS3P0CW19 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 AC138749.4-201ENST00000563970 127 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 MIR378D2-201ENST00000580636 98 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 AL049861.1-201ENST00000603130 150 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 AC011921.3-201ENST00000605540 361 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 MIR548AZ-201ENST00000616567 95 ntBASIC-0.67□□□□□ -2.52
LIMS3P0CW19 Y_RNA.41-201ENST00000362646 102 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 Y_RNA.486-201ENST00000384398 107 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 MIR548A2-201ENST00000384956 97 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 MIR196A2-201ENST00000385189 110 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 RNU6-308P-201ENST00000390957 107 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 SNORD77.4-201ENST00000516158 81 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 RNU6-126P-201ENST00000516685 103 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 CR383656.4-201ENST00000546909 122 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 AC141846.1-201ENST00000568348 142 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 Y_RNA.772-201ENST00000606692 102 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 AL162376.1-201ENST00000624117 175 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 MIR6759-201ENST00000638110 65 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 AC099654.14-201ENST00000638599 341 ntBASIC-0.68□□□□□ -2.52
LIMS3P0CW19 MIR302B-201ENST00000362188 73 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 RNA5SP257-201ENST00000363023 116 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 RNU6-726P-201ENST00000364680 107 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 Y_RNA.314-201ENST00000365114 102 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 AC096949.1-201ENST00000412047 152 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 MTATP6P17-201ENST00000431030 672 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 MTND1P29-201ENST00000448112 647 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.69□□□□□ -2.52
LIMS3P0CW19 MIR4677-201ENST00000584153 80 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 AP001180.6-201ENST00000584918 159 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 SNORA70.25-201ENST00000612741 95 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 FTX_2.1-201ENST00000618816 94 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 uc_338.36-201ENST00000622331 158 ntBASIC-0.69□□□□□ -2.52
LIMS3P0CW19 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.69□□□□□ -2.52
LIMS3P0CW19 MIR148A-201ENST00000362215 68 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 RNU6-888P-201ENST00000363010 101 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 SNORD49B-201ENST00000365172 72 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 SNORA22B-201ENST00000383876 138 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 RNU6-949P-201ENST00000384040 107 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 Y_RNA.554-201ENST00000384672 102 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 RNU6-21P-201ENST00000384710 107 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 MIR548L-201ENST00000408303 86 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 MIR3925-201ENST00000584674 77 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 AC138305.3-201ENST00000624988 240 ntBASIC-0.7□□□□□ -2.52
LIMS3P0CW19 Y_RNA.86-201ENST00000363020 111 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 RNU4-80P-201ENST00000363200 141 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 SNORD61-201ENST00000384252 73 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 SNORD116-1-201ENST00000384335 95 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 AC100767.1-201ENST00000528178 123 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 MIR4263-201ENST00000584745 83 ntBASIC-0.71□□□□□ -2.52
LIMS3P0CW19 MIR342-201ENST00000362212 99 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.383-201ENST00000383855 97 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 RNU6-383P-201ENST00000410864 94 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.646-201ENST00000410980 101 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 RPL21P38-201ENST00000418090 167 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.673-201ENST00000516306 88 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 SNORA25.16-201ENST00000516741 121 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 RNU6-365P-201ENST00000517113 106 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 RNU6-1270P-201ENST00000517128 108 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 VN1R91P-201ENST00000594377 169 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 AL162726.3-218ENST00000636401 95 ntBASIC-0.72□□□□□ -2.52
LIMS3P0CW19 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 RNU6-597P-201ENST00000365620 102 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.73□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 343.7 ms