Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC006461.1-201ENST00000412637 326 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.06□□□□□ -2.24
HOXD4P09016 AC087343.1-201ENST00000477341 475 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 RNU6-165P-201ENST00000517170 99 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.06□□□□□ -2.24
HOXD4P09016 MIR3664-201ENST00000579074 99 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR4431-201ENST00000579990 94 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR378D2-201ENST00000580636 98 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 FTX_2.1-201ENST00000618816 94 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR6515-201ENST00000619843 57 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 SNORD114-27-201ENST00000363766 70 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 SNORD115-28-201ENST00000363931 81 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNU6-978P-201ENST00000364371 103 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 Y_RNA.354-201ENST00000365448 111 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 SNORA1-201ENST00000384107 130 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR222-201ENST00000384992 110 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
HOXD4P09016 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
HOXD4P09016 RPS29P1-201ENST00000465274 159 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 Y_RNA.662-201ENST00000516028 97 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNA5SP480-201ENST00000516840 109 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNU6-1223P-201ENST00000517124 104 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR548AR-201ENST00000582191 57 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 AL096861.1-201ENST00000610899 123 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR8065-201ENST00000620577 100 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.05□□□□□ -2.24
HOXD4P09016 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
HOXD4P09016 Y_RNA.37-201ENST00000362606 108 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 Y_RNA.150-201ENST00000363562 102 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA25.8-201ENST00000364831 128 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR618-201ENST00000385287 98 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
HOXD4P09016 PCNPP3-201ENST00000393579 471 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU6-938P-201ENST00000411285 103 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.04□□□□□ -2.24
HOXD4P09016 AF228730.3-201ENST00000436691 102 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU7-41P-201ENST00000515917 61 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU6-947P-201ENST00000516264 106 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORD116-25-201ENST00000516517 92 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU7-43P-201ENST00000516554 64 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AC019288.1-201ENST00000557918 224 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR4764-201ENST00000580680 88 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR3192-201ENST00000584920 77 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AL357312.1-201ENST00000603879 298 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR6788-201ENST00000618842 66 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU4-84P-201ENST00000364200 139 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR570-201ENST00000384917 97 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR520C-201ENST00000385005 87 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC107027.2-201ENST00000512197 115 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 SNORD36C-201ENST00000516733 66 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 RN7SKP88-201ENST00000516847 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR3129-201ENST00000581095 76 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR151B-201ENST00000584249 96 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC098479.1-201ENST00000609225 154 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.8-201ENST00000612110 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.11-201ENST00000615477 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC134878.1-201ENST00000619901 243 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.13-201ENST00000622040 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR376A2-201ENST00000636782 80 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.241-201ENST00000364470 117 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.270-201ENST00000364693 104 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.370-201ENST00000365589 108 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.494-201ENST00000384432 111 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 RNU6-768P-201ENST00000384683 107 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 SNORD77.3-201ENST00000391113 65 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.02□□□□□ -2.25
HOXD4P09016 AC087499.4-201ENST00000448505 178 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 snoU13.25-201ENST00000458945 104 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AP003484.1-201ENST00000530974 250 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AL365205.2-201ENST00000594586 68 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AC008133.2-201ENST00000624540 351 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.02□□□□□ -2.25
HOXD4P09016 SNORD114-26-201ENST00000363543 72 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.357-201ENST00000365487 109 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-1336P-201ENST00000383886 109 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.441-201ENST00000384123 112 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-886P-201ENST00000384319 105 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.521-201ENST00000384560 114 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.542-201ENST00000384641 111 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-239P-201ENST00000390990 99 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
HOXD4P09016 RPS26P48-201ENST00000491713 339 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 SNORA18.4-201ENST00000516440 124 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-113P-201ENST00000516653 101 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
HOXD4P09016 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.01□□□□□ -2.25
HOXD4P09016 MIR6767-201ENST00000637302 66 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
HOXD4P09016 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-34-201ENST00000362441 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNA5SP327-201ENST00000362494 101 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-12-201ENST00000362583 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-29-201ENST00000362834 82 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms