| C9 | P02748 | PRELID3BP2-201 | ENST00000605362 | 201 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| C9 | P02748 | ZNF518A-210 | ENST00000624776 | 7994 nt | APPRIS P1 TSL 1 (best) BASIC | 1.01 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.7-201 | ENST00000362352 | 102 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.182-201 | ENST00000363880 | 111 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.634-201 | ENST00000364811 | 113 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.355-201 | ENST00000365462 | 98 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | SNORA70.7-201 | ENST00000384159 | 133 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | SNORD38C-201 | ENST00000384381 | 69 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.508-201 | ENST00000384502 | 114 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.547-201 | ENST00000384654 | 119 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR19B1-201 | ENST00000384829 | 87 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR570-201 | ENST00000384917 | 97 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | AP003716.2-201 | ENST00000528260 | 108 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR5688-201 | ENST00000580619 | 83 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR4744-201 | ENST00000581563 | 82 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | AC006441.5-201 | ENST00000612680 | 209 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | AC004792.1-201 | ENST00000614523 | 137 nt | BASIC | 1 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR103A2-201 | ENST00000362154 | 78 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.233-201 | ENST00000364407 | 101 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | AF228730.3-201 | ENST00000436691 | 102 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | AC092892.1-201 | ENST00000496067 | 327 nt | TSL 5 BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU6-1270P-201 | ENST00000517128 | 108 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU7-181P-201 | ENST00000517234 | 74 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU6-794P-201 | ENST00000517261 | 64 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR548AR-201 | ENST00000582191 | 57 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | CLRN1-AS1.1-201 | ENST00000615643 | 79 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| C9 | P02748 | RNA5SP264-201 | ENST00000363115 | 107 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.150-201 | ENST00000363562 | 102 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU6-978P-201 | ENST00000364371 | 103 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU4-38P-201 | ENST00000364472 | 129 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.435-201 | ENST00000384095 | 112 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU2-64P-201 | ENST00000411315 | 191 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | AC092783.1-201 | ENST00000435832 | 231 nt | TSL 3 BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | SEPT7P4-201 | ENST00000437076 | 306 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | AL353614.1-201 | ENST00000445631 | 206 nt | TSL 5 BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | AL121580.1-201 | ENST00000449941 | 219 nt | TSL 3 BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU7-21P-201 | ENST00000459430 | 62 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU6-113P-201 | ENST00000516653 | 101 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | SNORD36C-201 | ENST00000516733 | 66 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | SNORA81.3-201 | ENST00000517283 | 198 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | MRPS18CP4-201 | ENST00000535821 | 231 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | SNORA4-201 | ENST00000584302 | 138 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | AC097639.2-201 | ENST00000603159 | 172 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| C9 | P02748 | ZGRF1-202 | ENST00000309071 | 3347 nt | TSL 1 (best) BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU6-1020P-201 | ENST00000363684 | 107 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR520E-201 | ENST00000384867 | 87 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR548O-201 | ENST00000408583 | 114 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | RNU7-120P-201 | ENST00000459334 | 63 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | AC015726.2-201 | ENST00000620112 | 122 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | SLC8A1-AS1-230 | ENST00000627538 | 212 nt | TSL 5 BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | MIR3658-201 | ENST00000636291 | 56 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | EYS-205 | ENST00000393380 | 5450 nt | TSL 1 (best) BASIC | 0.97 | □□□□□ -2.25 | | |
| C9 | P02748 | Y_RNA.75-201 | ENST00000362927 | 97 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.121-201 | ENST00000363309 | 113 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-275P-201 | ENST00000364910 | 107 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.785-201 | ENST00000384290 | 109 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.515-201 | ENST00000384535 | 112 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU4-70P-201 | ENST00000384579 | 139 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | SNORD77.3-201 | ENST00000391113 | 65 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | MIR1302-7-201 | ENST00000408841 | 72 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU4-43P-201 | ENST00000410628 | 137 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-1135P-201 | ENST00000411083 | 103 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.793-201 | ENST00000411222 | 111 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | AC023449.1-201 | ENST00000454464 | 154 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU7-90P-201 | ENST00000459216 | 62 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | AC131956.1-201 | ENST00000506420 | 258 nt | TSL 2 BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.797-201 | ENST00000515977 | 94 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-693P-201 | ENST00000516134 | 107 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-197P-201 | ENST00000516680 | 100 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | AP002392.1-201 | ENST00000537692 | 208 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | AC023827.1-201 | ENST00000569247 | 97 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | Z83818.1-201 | ENST00000603584 | 150 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | MTND5P32-201 | ENST00000560711 | 1802 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-888P-201 | ENST00000363010 | 101 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-1082P-201 | ENST00000364574 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.432-201 | ENST00000384087 | 111 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | MIR942-201 | ENST00000401111 | 86 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | MIR1185-1-201 | ENST00000408598 | 86 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | AL121914.1-201 | ENST00000450188 | 156 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU2-13P-201 | ENST00000515909 | 113 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-1299P-201 | ENST00000516316 | 100 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | NPPA-AS1_2.1-201 | ENST00000618496 | 149 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | FTX_2.1-201 | ENST00000618816 | 94 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | UGP2-230 | ENST00000626380 | 276 nt | TSL 5 BASIC | 0.95 | □□□□□ -2.26 | | |
| C9 | P02748 | MIR373-201 | ENST00000362273 | 69 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.29-201 | ENST00000362570 | 113 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-508P-201 | ENST00000363231 | 103 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-103P-201 | ENST00000363686 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | Y_RNA.240-201 | ENST00000364469 | 95 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-1130P-201 | ENST00000365434 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNY3P5-201 | ENST00000384127 | 102 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU6-768P-201 | ENST00000384683 | 107 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | MIR532-201 | ENST00000385025 | 91 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | U8.17-201 | ENST00000391292 | 132 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| C9 | P02748 | RNU2-55P-201 | ENST00000411146 | 174 nt | BASIC | 0.94 | □□□□□ -2.26 | | |