Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 U6.90-201ENST00000614007 104 ntBASIC0.22□□□□□ -2.37
TRAV39A0A0B4J263 U6.70-201ENST00000620287 104 ntBASIC0.22□□□□□ -2.37
TRAV39A0A0B4J263 Z97988.1-201ENST00000637697 135 ntBASIC0.22□□□□□ -2.37
TRAV39A0A0B4J263 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.22□□□□□ -2.37
TRAV39A0A0B4J263 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 MIR342-201ENST00000362212 99 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.105-201ENST00000363182 111 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.389-201ENST00000383924 113 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.419-201ENST00000384041 102 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-514P-201ENST00000384208 107 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 SNORD61-201ENST00000384252 73 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 MIR125B2-201ENST00000385128 89 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 SNORD12C-201ENST00000386307 89 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-1190P-201ENST00000410811 104 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 SNORD71-201ENST00000411292 86 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 MIR18B-201ENST00000454574 71 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 RNU7-185P-201ENST00000459215 60 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 AC100767.1-201ENST00000528178 123 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 RN7SL793P-201ENST00000583259 296 ntBASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
TRAV39A0A0B4J263 SNORA25.1-201ENST00000362326 128 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 SNORA63.7-201ENST00000365579 123 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-823P-201ENST00000391042 103 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-101P-201ENST00000410323 104 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-602P-201ENST00000411155 105 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 MTCO2P24-201ENST00000515611 426 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 SNORA62.5-201ENST00000516634 120 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 RNA5SP94-201ENST00000516917 108 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 RNU2-31P-201ENST00000516954 155 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 MIR4662B-201ENST00000579498 81 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 AC090897.1-201ENST00000580909 226 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 AC006006.1-201ENST00000603082 144 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 SNORA25.18-201ENST00000607153 114 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.2□□□□□ -2.38
TRAV39A0A0B4J263 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 AC090625.1-201ENST00000357130 210 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-290P-201ENST00000365212 101 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.393-201ENST00000383936 102 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 MIR548A2-201ENST00000384956 97 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 MIR518A1-201ENST00000385068 85 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.581-201ENST00000391017 97 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-121P-201ENST00000410525 99 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 SNORA40.8-201ENST00000411034 126 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 snoU13.2-201ENST00000459201 104 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 SNORA40.15-201ENST00000516884 107 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-365P-201ENST00000517113 106 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 AC022523.2-201ENST00000561045 150 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 AC037487.3-201ENST00000606668 112 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 AC090971.5-201ENST00000621102 293 ntBASIC0.19□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.24-201ENST00000362508 103 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.36-201ENST00000362602 112 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 RNA5SP117-201ENST00000365294 118 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.541-201ENST00000384640 113 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.572-201ENST00000384757 98 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 MIR215-201ENST00000384858 110 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 SNORA53-201ENST00000391141 249 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 SNORD100-201ENST00000408573 76 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 RNU2-70P-201ENST00000410718 179 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 SNRPGP12-201ENST00000449481 213 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 RNU2-11P-201ENST00000459191 187 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 AL008718.3-201ENST00000610217 321 ntBASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
TRAV39A0A0B4J263 SNORD44.1-201ENST00000363202 61 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 RNA5SP62-201ENST00000363457 110 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.395-201ENST00000383945 109 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 MIR193B-201ENST00000384907 83 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 MIR548I3-201ENST00000408378 149 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 MIR1252-201ENST00000408861 65 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 RNY3P15-201ENST00000516297 97 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.802-201ENST00000614892 130 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 snoU18.1-201ENST00000629629 71 ntBASIC0.17□□□□□ -2.38
TRAV39A0A0B4J263 snoU2_19.2-201ENST00000363024 80 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.380-201ENST00000365663 111 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 SNORD24-201ENST00000383884 75 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 RNY3P14-201ENST00000384309 102 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 Y_RNA.567-201ENST00000384736 106 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 SNORD77.3-201ENST00000391113 65 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 AF228730.3-201ENST00000436691 102 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 AC108740.1-201ENST00000498629 225 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-504P-201ENST00000516568 104 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 MIR3678-201ENST00000578455 94 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 SNORD92-201ENST00000585078 85 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 uc_338.16-201ENST00000621804 95 ntBASIC0.16□□□□□ -2.38
TRAV39A0A0B4J263 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 RNU6-888P-201ENST00000363010 101 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 MT-TD-201ENST00000387419 68 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 RPL21P38-201ENST00000418090 167 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 MTND4LP30-201ENST00000454092 297 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 RNU7-45P-201ENST00000459460 63 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 RNU6-998P-201ENST00000515894 101 ntBASIC0.15□□□□□ -2.39
TRAV39A0A0B4J263 SNORA27.4-201ENST00000516650 95 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms