Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.44-201ENST00000362676 108 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 SNORA24-201ENST00000384096 131 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 Y_RNA.486-201ENST00000384398 107 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.85□□□□□ -2.27
VPS28Q9UK41 AL078603.1-201ENST00000603824 313 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 AP000753.3-201ENST00000604083 169 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 AC104465.1-201ENST00000611365 139 ntBASIC0.85□□□□□ -2.27
VPS28Q9UK41 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.85□□□□□ -2.27
VPS28Q9UK41 Y_RNA.116-201ENST00000363292 103 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 SNORD24-201ENST00000383884 75 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 AC006461.1-201ENST00000412637 326 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 TRBVB-201ENST00000477100 408 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 RNU6-351P-201ENST00000516097 100 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 RNU6-365P-201ENST00000517113 106 ntBASIC0.84□□□□□ -2.27
VPS28Q9UK41 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
VPS28Q9UK41 Y_RNA.24-201ENST00000362508 103 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 Y_RNA.422-201ENST00000384054 114 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 MIR100-201ENST00000385259 80 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 RNU6-1109P-201ENST00000391187 107 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 MIR1827-201ENST00000408549 66 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 RNU7-67P-201ENST00000459003 62 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 RNU6-693P-201ENST00000516134 107 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 RNU6-1153P-201ENST00000516760 105 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 AC007751.1-201ENST00000529260 376 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 AC108706.1-201ENST00000611053 297 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 MIR6788-201ENST00000618842 66 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 AC134878.1-201ENST00000619901 243 ntBASIC0.83□□□□□ -2.28
VPS28Q9UK41 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.83□□□□□ -2.28
VPS28Q9UK41 MIR1-1-201ENST00000362147 71 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 Y_RNA.229-201ENST00000364347 113 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 RNU6-110P-201ENST00000384508 104 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 SNORA40.5-201ENST00000391061 128 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 SNORA26-201ENST00000391286 122 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 SNORD99-201ENST00000408612 74 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 MIR548J-201ENST00000408833 112 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.82□□□□□ -2.28
VPS28Q9UK41 AC100767.1-201ENST00000528178 123 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 MIR4264-201ENST00000583520 66 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 AP000942.4-201ENST00000604811 241 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 AP001282.2-201ENST00000616149 309 ntBASIC0.82□□□□□ -2.28
VPS28Q9UK41 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.82□□□□□ -2.28
VPS28Q9UK41 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.81□□□□□ -2.28
VPS28Q9UK41 Y_RNA.117-201ENST00000363294 101 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 MIR518F-201ENST00000384973 87 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 MIR626-201ENST00000385032 94 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 RPS26P5-201ENST00000418544 335 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 Y_RNA.673-201ENST00000516306 88 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 RNU6-504P-201ENST00000516568 104 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 CYP3A137P-201ENST00000562436 69 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 MIR151B-201ENST00000584249 96 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 U2.14-201ENST00000615943 113 ntBASIC0.81□□□□□ -2.28
VPS28Q9UK41 HSBP1P2-201ENST00000299671 229 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 Y_RNA.37-201ENST00000362606 108 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 Y_RNA.237-201ENST00000364439 102 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 Y_RNA.494-201ENST00000384432 111 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 MIR518E-201ENST00000385252 88 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 RNU2-55P-201ENST00000411146 174 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 AC004941.2-201ENST00000427009 228 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 RNA5SP220-201ENST00000516298 104 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 AP003484.1-201ENST00000530974 250 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 AC013244.2-201ENST00000603396 103 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 U6.104-201ENST00000637979 90 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
VPS28Q9UK41 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-888P-201ENST00000363010 101 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 SNORD45.3-201ENST00000363836 72 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-740P-201ENST00000364734 105 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-580P-201ENST00000365159 107 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNY3P5-201ENST00000384127 102 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 SNORD61-201ENST00000384252 73 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-125P-201ENST00000384505 107 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 Y_RNA.572-201ENST00000384757 98 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 MIR548A2-201ENST00000384956 97 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 SNORD105-201ENST00000386910 85 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-205P-201ENST00000390858 107 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU7-73P-201ENST00000458743 63 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-1299P-201ENST00000516316 100 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 SNORA18.4-201ENST00000516440 124 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU7-53P-201ENST00000516705 60 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-958P-201ENST00000516995 106 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 RNU6-1270P-201ENST00000517128 108 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 AC023934.1-201ENST00000574529 2389 ntBASIC0.79□□□□□ -2.28
VPS28Q9UK41 Y_RNA.82-201ENST00000363000 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.92-201ENST00000363043 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.122-201ENST00000363331 96 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.235-201ENST00000364412 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.269-201ENST00000364685 89 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.306-201ENST00000365015 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.312-201ENST00000365089 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.322-201ENST00000365151 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 SNORA27-201ENST00000384323 126 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 SNORD2.1-201ENST00000458762 69 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.650-201ENST00000459002 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 RNU6-635P-201ENST00000516651 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.777-201ENST00000516982 102 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms