Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL606490.4-201ENST00000423117 127 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 MTND5P15-201ENST00000434246 349 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 RNU6-1153P-201ENST00000516760 105 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.241-201ENST00000364470 117 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 RNU6-1138P-201ENST00000365359 106 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.486-201ENST00000384398 107 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.572-201ENST00000384757 98 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 AL731563.1-201ENST00000442202 214 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 SERF1AP1-201ENST00000514575 187 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 RNU2-13P-201ENST00000515909 113 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 RNU6-1338P-201ENST00000516328 91 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 AC006006.1-201ENST00000603082 144 ntBASIC0.65□□□□□ -2.31
LHX3Q9UBR4 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.24-201ENST00000362508 103 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 SNORA33.2-201ENST00000365413 134 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.354-201ENST00000365448 111 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 RNU6-205P-201ENST00000390858 107 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 RNU6-985P-201ENST00000410182 104 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 RNU7-67P-201ENST00000459003 62 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 AC107297.1-201ENST00000459991 176 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 MTCO2P24-201ENST00000515611 426 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 AC007751.1-201ENST00000529260 376 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.802-201ENST00000614892 130 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.64□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.36-201ENST00000362602 112 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.117-201ENST00000363294 101 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.168-201ENST00000363740 102 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 RNU6-211P-201ENST00000384047 107 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 RNU6-125P-201ENST00000384505 107 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 RNU6-342P-201ENST00000384521 104 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 MIR1827-201ENST00000408549 66 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 RNU6-1203P-201ENST00000410703 110 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 SNORD77.4-201ENST00000516158 81 ntBASIC0.63□□□□□ -2.31
LHX3Q9UBR4 MIR1-1-201ENST00000362147 71 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 SNORD115-28-201ENST00000363931 81 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 RNU6-639P-201ENST00000384074 107 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 RNU6-1289P-201ENST00000384431 106 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 MIR526A2-201ENST00000390198 65 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 AC113618.1-201ENST00000416747 285 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 AC090844.1-201ENST00000422019 156 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 MTCYBP6-201ENST00000441810 138 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.62□□□□□ -2.31
LHX3Q9UBR4 snoU13.21-201ENST00000459368 105 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 COX6CP6-201ENST00000490840 228 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 RNU6-693P-201ENST00000516134 107 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 RNU6-958P-201ENST00000516995 106 ntBASIC0.62□□□□□ -2.31
LHX3Q9UBR4 UBE2WP1-201ENST00000362030 340 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 SNORD45.3-201ENST00000363836 72 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.376-201ENST00000365638 108 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 SNORA8.3-201ENST00000384679 139 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 RNA5SP480-201ENST00000516840 109 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 RNU6-1270P-201ENST00000517128 108 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.61□□□□□ -2.31
LHX3Q9UBR4 AC044792.1-201ENST00000593294 196 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 AC134878.1-201ENST00000619901 243 ntBASIC0.61□□□□□ -2.31
LHX3Q9UBR4 SNORD115-34-201ENST00000362441 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-12-201ENST00000362583 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-29-201ENST00000362834 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-9-201ENST00000362912 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-21-201ENST00000362963 81 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-14-201ENST00000363090 81 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-13-201ENST00000363358 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-41-201ENST00000363608 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-11-201ENST00000363616 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-5-201ENST00000363633 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-39-201ENST00000363694 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-4-201ENST00000363810 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-16-201ENST00000363887 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-6-201ENST00000363942 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-42-201ENST00000364273 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.229-201ENST00000364347 113 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.275-201ENST00000364726 110 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-15-201ENST00000364809 81 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-1-201ENST00000364961 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-26-201ENST00000365067 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-10-201ENST00000365073 81 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-43-201ENST00000365503 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-36-201ENST00000365629 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.512-201ENST00000384518 102 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD105-201ENST00000386910 85 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 MT-TN-201ENST00000387400 73 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 RNU6-938P-201ENST00000411285 103 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 AC015818.7-201ENST00000428754 109 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 AC087499.7-201ENST00000441958 109 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 snoU13.16-201ENST00000459350 104 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 AC100767.1-201ENST00000528178 123 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 AC011195.1-201ENST00000578177 177 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 MIR4662B-201ENST00000579498 81 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 AP000753.3-201ENST00000604083 169 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 SNORD115-40-201ENST00000606510 82 ntBASIC0.6□□□□□ -2.31
LHX3Q9UBR4 MIR377-201ENST00000362145 69 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 Y_RNA.37-201ENST00000362606 108 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 SNORD114-26-201ENST00000363543 72 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 RNU1-133P-201ENST00000364867 167 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms