Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC090049.2-201ENST00000550377 109 ntBASIC1.83□□□□□ -2.12
TDP1Q9NUW8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.83□□□□□ -2.12
TDP1Q9NUW8 MIR302D-201ENST00000362275 68 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.338-201ENST00000365320 114 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.343-201ENST00000365354 112 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 RNU6-1189P-201ENST00000383958 107 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 SNORD123-201ENST00000459473 70 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 RNA5SP272-201ENST00000516095 111 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 SNORA18.7-201ENST00000516910 131 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 AP003484.1-201ENST00000530974 250 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 MIR5197-201ENST00000583721 112 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 AC131055.1-201ENST00000584626 316 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 MIR502-201ENST00000606349 86 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 MIR8063-201ENST00000621930 81 ntBASIC1.82□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.52-201ENST00000362760 96 ntBASIC1.81□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.568-201ENST00000384742 113 ntBASIC1.81□□□□□ -2.12
TDP1Q9NUW8 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.81□□□□□ -2.12
TDP1Q9NUW8 uc_338.20-201ENST00000621563 178 ntBASIC1.81□□□□□ -2.12
TDP1Q9NUW8 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
TDP1Q9NUW8 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
TDP1Q9NUW8 MIR613-201ENST00000385248 95 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.584-201ENST00000391090 114 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 RNU6-460P-201ENST00000391158 108 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 HSPE1P24-201ENST00000450782 238 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 RNU6-322P-201ENST00000516010 103 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 MIR3198-2-201ENST00000577868 80 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 MIR3935-201ENST00000583472 104 ntBASIC1.8□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.241-201ENST00000364470 117 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 SNORD50.2-201ENST00000365465 70 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.420-201ENST00000384043 110 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.440-201ENST00000384120 114 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 SNORA20-201ENST00000384662 132 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 SNORA67.5-201ENST00000391036 107 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.79□□□□□ -2.12
TDP1Q9NUW8 AL392103.1-201ENST00000447000 198 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 RNU6-922P-201ENST00000516753 99 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 SNORA74.3-201ENST00000517108 154 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 MIR4419B-201ENST00000577260 68 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 MIR4498-201ENST00000577599 66 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 MIR548AR-201ENST00000582191 57 ntBASIC1.79□□□□□ -2.12
TDP1Q9NUW8 WWP1P1-201ENST00000466609 2769 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
TDP1Q9NUW8 RNU6-704P-201ENST00000364162 103 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 SNORD1A-201ENST00000364968 72 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 Y_RNA.494-201ENST00000384432 111 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 SNORD28B-201ENST00000390993 75 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 SNORA40.5-201ENST00000391061 128 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 AL451046.2-201ENST00000403074 277 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 AC108729.3-201ENST00000513484 108 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 RNU6-1149P-201ENST00000516810 97 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 SCARNA15-202ENST00000516881 127 ntBASIC1.78□□□□□ -2.12
TDP1Q9NUW8 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.78□□□□□ -2.12
TDP1Q9NUW8 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.78□□□□□ -2.13
TDP1Q9NUW8 AC010332.2-201ENST00000613083 1904 ntBASIC1.78□□□□□ -2.13
TDP1Q9NUW8 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
TDP1Q9NUW8 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
TDP1Q9NUW8 MTND5P32-201ENST00000560711 1802 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 MIR378A-201ENST00000362177 66 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-34-201ENST00000362441 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-12-201ENST00000362583 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-29-201ENST00000362834 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-9-201ENST00000362912 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-21-201ENST00000362963 81 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-14-201ENST00000363090 81 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-13-201ENST00000363358 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-41-201ENST00000363608 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-11-201ENST00000363616 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-5-201ENST00000363633 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-39-201ENST00000363694 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-4-201ENST00000363810 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-16-201ENST00000363887 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-6-201ENST00000363942 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-42-201ENST00000364273 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-15-201ENST00000364809 81 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-1-201ENST00000364961 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-26-201ENST00000365067 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-10-201ENST00000365073 81 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORA1.2-201ENST00000365189 134 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-43-201ENST00000365503 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-36-201ENST00000365629 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD41-201ENST00000386967 70 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.77□□□□□ -2.13
TDP1Q9NUW8 RPS26P48-201ENST00000491713 339 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 RNU2-60P-201ENST00000517290 128 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 AC090821.2-201ENST00000523552 176 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.77□□□□□ -2.13
TDP1Q9NUW8 AL513534.2-201ENST00000603836 250 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 SNORD115-40-201ENST00000606510 82 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.77□□□□□ -2.13
TDP1Q9NUW8 U8.1-201ENST00000362843 134 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.120-201ENST00000363304 110 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 Y_RNA.370-201ENST00000365589 108 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 SNORA27-201ENST00000384323 126 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 SUMO2P12-201ENST00000405924 140 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 RNA5SP489-201ENST00000410986 109 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 BTF3P4-201ENST00000418852 495 ntBASIC1.76□□□□□ -2.13
TDP1Q9NUW8 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.76□□□□□ -2.13
TDP1Q9NUW8 AC079140.2-201ENST00000506193 142 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms