Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 SNORA63C-201ENST00000364578 129 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 RNU5E-4P-201ENST00000364931 120 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 RNU6-806P-201ENST00000365147 105 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 SNORA36.2-201ENST00000384004 127 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.455-201ENST00000384230 98 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 RNU6-125P-201ENST00000384505 107 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 RNU6-1237P-201ENST00000384777 107 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 MIR4264-201ENST00000583520 66 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 AC134878.1-201ENST00000619901 243 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 AC134503.1-201ENST00000633048 54 ntBASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.138-201ENST00000363462 102 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 SNORD45.3-201ENST00000363836 72 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 RNU6-1138P-201ENST00000365359 106 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.494-201ENST00000384432 111 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 MIR92A1-201ENST00000385233 78 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.587-201ENST00000391210 103 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 SNORD83.1-201ENST00000411362 77 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 snoU13.16-201ENST00000459350 104 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 RNU6-958P-201ENST00000516995 106 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 AC006006.1-201ENST00000603082 144 ntBASIC0.72□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.158-201ENST00000363651 101 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-28-201ENST00000363931 81 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 RNU4-10P-201ENST00000364383 140 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 RNU6-867P-201ENST00000364956 107 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 RNU6-934P-201ENST00000365154 107 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.486-201ENST00000384398 107 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 MIR548P-201ENST00000408336 84 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 MTCO2P12-201ENST00000427426 682 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 AC015818.7-201ENST00000428754 109 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 AC087499.7-201ENST00000441958 109 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 SNORA27.4-201ENST00000516650 95 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.711-201ENST00000516993 102 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 AL355297.3-201ENST00000604082 446 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 snoU18.1-201ENST00000629629 71 ntBASIC0.71□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.16-201ENST00000362421 102 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-34-201ENST00000362441 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.26-201ENST00000362539 101 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-12-201ENST00000362583 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-29-201ENST00000362834 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.64-201ENST00000362845 102 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-9-201ENST00000362912 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-21-201ENST00000362963 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-14-201ENST00000363090 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-13-201ENST00000363358 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-41-201ENST00000363608 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-11-201ENST00000363616 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-5-201ENST00000363633 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-39-201ENST00000363694 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-4-201ENST00000363810 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-16-201ENST00000363887 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-6-201ENST00000363942 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.216-201ENST00000364205 93 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-42-201ENST00000364273 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-15-201ENST00000364809 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-1-201ENST00000364961 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-26-201ENST00000365067 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-10-201ENST00000365073 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 RNU6-580P-201ENST00000365159 107 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-43-201ENST00000365503 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-36-201ENST00000365629 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 RNU6-177P-201ENST00000411257 104 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 AC090844.1-201ENST00000422019 156 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD77.4-201ENST00000516158 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 RNU6-977P-201ENST00000516411 103 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 AP003733.2-201ENST00000529409 171 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 MIR4771-2-201ENST00000577758 74 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 MIR4662B-201ENST00000579498 81 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 AC113195.1-201ENST00000579952 141 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 MIR4771-1-201ENST00000582617 74 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 SNORD115-40-201ENST00000606510 82 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 AL008718.3-201ENST00000610217 321 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.802-201ENST00000614892 130 ntBASIC0.7□□□□□ -2.3
CHMP4AQ9BY43 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.152-201ENST00000363578 100 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 RNU6-342P-201ENST00000384521 104 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.535-201ENST00000384612 99 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 MIR520F-201ENST00000384824 87 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 RNU6-693P-201ENST00000516134 107 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 AC007751.1-201ENST00000529260 376 ntBASIC0.69□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.61-201ENST00000362835 102 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 MIR520H-201ENST00000385126 88 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 MTCO2P24-201ENST00000515611 426 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 RNU6-1143P-201ENST00000516125 104 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 SCARNA24.2-201ENST00000516968 130 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 AP003484.1-201ENST00000530974 250 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 MIR3171-201ENST00000584270 74 ntBASIC0.68□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.217-201ENST00000364214 105 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 MIR573-201ENST00000384964 99 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 MIR140-201ENST00000385282 100 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 AC087499.4-201ENST00000448505 178 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 RNU7-62P-201ENST00000458856 62 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 Y_RNA.641-201ENST00000459414 105 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 RNU6-1270P-201ENST00000517128 108 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 AP000942.4-201ENST00000604811 241 ntBASIC0.67□□□□□ -2.3
CHMP4AQ9BY43 AC090625.1-201ENST00000357130 210 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms