Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 Y_RNA.622-201ENST00000411091 108 ntBASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 RPL39P28-201ENST00000465655 155 ntBASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 RPS23P4-201ENST00000487908 423 ntBASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 RNU6-693P-201ENST00000516134 107 ntBASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 RNY3P16-201ENST00000516338 101 ntBASIC0.98□□□□□ -2.25
CCDC28BQ9BUN5 SNORD61-201ENST00000384252 73 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 RNU4-70P-201ENST00000384579 139 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 Y_RNA.571-201ENST00000384753 98 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 MIR548A2-201ENST00000384956 97 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 MIR518F-201ENST00000384973 87 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC107297.1-201ENST00000459991 176 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 SNORA31.2-201ENST00000516019 134 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 RNA5SP404-201ENST00000517118 132 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC109810.1-201ENST00000534066 224 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 MIR4308-201ENST00000580634 81 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 MIR3192-201ENST00000584920 77 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC108706.1-201ENST00000611053 297 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC134878.1-201ENST00000619901 243 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 AC008133.2-201ENST00000624540 351 ntBASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.97□□□□□ -2.25
CCDC28BQ9BUN5 SNORD115-34-201ENST00000362441 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNA5SP327-201ENST00000362494 101 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-12-201ENST00000362583 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-29-201ENST00000362834 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-9-201ENST00000362912 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-21-201ENST00000362963 81 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.91-201ENST00000363042 107 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-14-201ENST00000363090 81 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-13-201ENST00000363358 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-41-201ENST00000363608 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-11-201ENST00000363616 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-5-201ENST00000363633 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-39-201ENST00000363694 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-4-201ENST00000363810 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-16-201ENST00000363887 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-6-201ENST00000363942 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-42-201ENST00000364273 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-15-201ENST00000364809 81 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-1-201ENST00000364961 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-26-201ENST00000365067 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-10-201ENST00000365073 81 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-43-201ENST00000365503 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-36-201ENST00000365629 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD28B-201ENST00000390993 75 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU4-62P-201ENST00000410125 130 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-847P-201ENST00000411115 108 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU7-95P-201ENST00000459222 64 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 AC048334.1-201ENST00000477975 159 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU2-13P-201ENST00000515909 113 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU7-41P-201ENST00000515917 61 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.797-201ENST00000515977 94 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU7-181P-201ENST00000517234 74 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 AC007751.1-201ENST00000529260 376 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 PRELID3BP2-201ENST00000605362 201 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNU2-4P-201ENST00000606190 192 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 SNORD115-40-201ENST00000606510 82 ntBASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC28BQ9BUN5 RNA5SP432-201ENST00000362480 116 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.37-201ENST00000362606 108 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.75-201ENST00000362927 97 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-923P-201ENST00000364753 107 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-275P-201ENST00000364910 107 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.410-201ENST00000383992 113 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 SNORD12-201ENST00000391002 90 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 SNORA40.5-201ENST00000391061 128 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 SNORA17.3-201ENST00000391159 129 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-918P-201ENST00000391219 106 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 AL121914.1-201ENST00000450188 156 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-561P-201ENST00000516222 102 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 AP003716.2-201ENST00000528260 108 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 AC130289.1-201ENST00000577321 73 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 AC012676.2-201ENST00000619258 186 ntBASIC0.95□□□□□ -2.26
CCDC28BQ9BUN5 MIR378A-201ENST00000362177 66 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 RNA5SP264-201ENST00000363115 107 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-1020P-201ENST00000363684 107 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 SNORA24-201ENST00000384096 131 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.542-201ENST00000384641 111 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 snoU13.25-201ENST00000458945 104 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.700-201ENST00000516806 100 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 RNU11-2P-201ENST00000516898 142 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 RNU6-1270P-201ENST00000517128 108 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 SNORA70.22-201ENST00000517160 124 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 AL022345.2-201ENST00000606307 135 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 MIR4791-201ENST00000607666 84 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 MIR4251-201ENST00000635819 61 ntBASIC0.94□□□□□ -2.26
CCDC28BQ9BUN5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 Y_RNA.182-201ENST00000363880 111 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 SNORA51.10-201ENST00000384418 136 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 SNORA80D-201ENST00000384488 135 ntBASIC0.93□□□□□ -2.26
CCDC28BQ9BUN5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms