Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MIR1265-201ENST00000408444 86 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 SNORA36B-201ENST00000410438 131 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.74□□□□□ -2.29
CDX2Q99626 AC092628.1-201ENST00000436250 252 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 RPS26P48-201ENST00000491713 339 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.74□□□□□ -2.29
CDX2Q99626 AC074198.2-201ENST00000508153 258 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 SNORD79.1-201ENST00000516069 84 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 RNU6-1023P-201ENST00000516137 106 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.74□□□□□ -2.29
CDX2Q99626 AC004817.2-201ENST00000561794 651 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 MIR4778-201ENST00000577635 80 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 MIR5692C2-201ENST00000577959 77 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AP003357.1-201ENST00000604497 148 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AC005972.2-201ENST00000604690 348 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AC013791.1-201ENST00000616619 62 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 AL591926.4-201ENST00000616895 298 ntBASIC0.74□□□□□ -2.29
CDX2Q99626 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.82-201ENST00000363000 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.92-201ENST00000363043 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RNU6-1209P-201ENST00000363655 107 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RNY1P11-201ENST00000363759 113 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.235-201ENST00000364412 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.253-201ENST00000364562 112 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.306-201ENST00000365015 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.308-201ENST00000365043 101 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.312-201ENST00000365089 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.322-201ENST00000365151 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RNU6-1318P-201ENST00000365389 103 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.352-201ENST00000365439 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.456-201ENST00000384232 111 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 SNORD72-201ENST00000390994 80 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 SNORA53-201ENST00000391141 249 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.621-201ENST00000411065 96 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.626-201ENST00000411288 95 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 AL390729.2-201ENST00000416137 156 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 MLLT10P1-201ENST00000418346 262 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 PIGPP3-201ENST00000425307 415 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 AC245047.8-201ENST00000456455 284 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.650-201ENST00000459002 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 AL049830.1-201ENST00000468034 425 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RPL23AP54-201ENST00000495129 419 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 RNU7-28P-201ENST00000516759 62 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.777-201ENST00000516982 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 AC127455.1-201ENST00000565496 145 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 MIR4661-201ENST00000582720 75 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.771-201ENST00000598668 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 MIR548AY-201ENST00000617669 107 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 Y_RNA.789-201ENST00000622480 102 ntBASIC0.73□□□□□ -2.29
CDX2Q99626 SNORD114-7-201ENST00000362520 77 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 SNORA20.1-201ENST00000364790 130 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 Y_RNA.293-201ENST00000364908 93 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 SNORD50B-201ENST00000364995 70 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 RNU6-1336P-201ENST00000383886 109 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 RNU6-1323P-201ENST00000384025 107 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 Y_RNA.556-201ENST00000384677 113 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 RNU6-910P-201ENST00000390844 107 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 RNU6-918P-201ENST00000391219 106 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 Y_RNA.590-201ENST00000410140 107 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 snoU13.25-201ENST00000458945 104 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.72□□□□□ -2.29
CDX2Q99626 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.72□□□□□ -2.29
CDX2Q99626 RNU6-138P-201ENST00000515952 107 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 SNORA31.4-201ENST00000516049 129 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 SNORA70.22-201ENST00000517160 124 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 AC100767.1-201ENST00000528178 123 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 AP002004.2-201ENST00000531656 154 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 AP000942.4-201ENST00000604811 241 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 MIR5087-201ENST00000635826 76 ntBASIC0.72□□□□□ -2.29
CDX2Q99626 AC008163.1-202ENST00000636004 2889 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 SNORD68-201ENST00000363214 84 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 RNA5SP499-201ENST00000363982 119 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 Y_RNA.203-201ENST00000364106 102 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 Y_RNA.229-201ENST00000364347 113 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 Y_RNA.304-201ENST00000365011 112 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 SNORA2.2-201ENST00000365473 135 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 Y_RNA.401-201ENST00000383965 117 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR562-201ENST00000384894 95 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR526A1-201ENST00000384897 85 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR626-201ENST00000385032 94 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR522-201ENST00000385071 87 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR1298-201ENST00000408783 112 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.71□□□□□ -2.3
CDX2Q99626 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.71□□□□□ -2.3
CDX2Q99626 SNORD11-201ENST00000459124 84 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 Y_RNA.679-201ENST00000516416 91 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 RNU6-229P-201ENST00000516614 102 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 AL358944.1-201ENST00000528537 144 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 RPL23AP91-201ENST00000569211 455 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 MIR3671-201ENST00000580455 88 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 AL049861.1-201ENST00000603130 150 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 AC009779.6-201ENST00000603972 165 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 RNU2-4P-201ENST00000606190 192 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 AL442067.1-201ENST00000613261 223 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.71□□□□□ -2.3
CDX2Q99626 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.71□□□□□ -2.3
CDX2Q99626 RNU6-1205P-201ENST00000363625 106 ntBASIC0.7□□□□□ -2.3
CDX2Q99626 RNU6-899P-201ENST00000363947 107 ntBASIC0.7□□□□□ -2.3
CDX2Q99626 RNU1-36P-201ENST00000365130 165 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 311.9 ms