Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 Y_RNA.785-201ENST00000384290 109 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 Y_RNA.521-201ENST00000384560 114 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
NUP88Q99567 RNU4-43P-201ENST00000410628 137 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 AC009474.2-201ENST00000451383 136 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 AC023790.1-201ENST00000482174 347 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 Y_RNA.662-201ENST00000516028 97 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 RNU6-830P-201ENST00000516353 107 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 RNU1-92P-201ENST00000517017 135 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 AL160236.1-201ENST00000556317 195 ntBASIC1.71□□□□□ -2.14
NUP88Q99567 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.71□□□□□ -2.14
NUP88Q99567 RNU6-888P-201ENST00000363010 101 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 Y_RNA.241-201ENST00000364470 117 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 RNU6-1067P-201ENST00000384752 107 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 RNU7-120P-201ENST00000459334 63 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 AC107297.1-201ENST00000459991 176 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 SNORD116-25-201ENST00000516517 92 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 RNU7-43P-201ENST00000516554 64 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 CYP3A52P-201ENST00000563326 91 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 MIR378D2-201ENST00000580636 98 ntBASIC1.7□□□□□ -2.14
NUP88Q99567 ZNF209P-201ENST00000593450 2304 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
NUP88Q99567 Y_RNA.66-201ENST00000362862 102 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 Y_RNA.118-201ENST00000363300 101 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 SNORA7.1-201ENST00000363750 139 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 Y_RNA.370-201ENST00000365589 108 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 MIR518F-201ENST00000384973 87 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.69□□□□□ -2.14
NUP88Q99567 SEPT7P4-201ENST00000437076 306 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 AC107027.2-201ENST00000512197 115 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 RNU6-970P-201ENST00000516312 107 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 MIR4421-201ENST00000578133 69 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 MIR4431-201ENST00000579990 94 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 MIR4764-201ENST00000580680 88 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 AC097639.2-201ENST00000603159 172 ntBASIC1.69□□□□□ -2.14
NUP88Q99567 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
NUP88Q99567 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
NUP88Q99567 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.68□□□□□ -2.14
NUP88Q99567 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
NUP88Q99567 Y_RNA.23-201ENST00000362496 106 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 RNU6-312P-201ENST00000364629 107 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 RNU4-57P-201ENST00000515980 135 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 AC007751.1-201ENST00000529260 376 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 MIR548AR-201ENST00000582191 57 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 AC134878.1-201ENST00000619901 243 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 MIR8065-201ENST00000620577 100 ntBASIC1.68□□□□□ -2.14
NUP88Q99567 Y_RNA.37-201ENST00000362606 108 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 RNY1P10-201ENST00000363268 113 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 Y_RNA.270-201ENST00000364693 104 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 MIR570-201ENST00000384917 97 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 MIR320A-201ENST00000385302 82 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 SNORD28B-201ENST00000390993 75 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.67□□□□□ -2.14
NUP88Q99567 MIR3129-201ENST00000581095 76 ntBASIC1.67□□□□□ -2.14
NUP88Q99567 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.67□□□□□ -2.14
NUP88Q99567 Y_RNA.327-201ENST00000365201 102 ntBASIC1.66□□□□□ -2.14
NUP88Q99567 MIR548A2-201ENST00000384956 97 ntBASIC1.66□□□□□ -2.14
NUP88Q99567 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.66□□□□□ -2.14
NUP88Q99567 AC087499.4-201ENST00000448505 178 ntBASIC1.66□□□□□ -2.14
NUP88Q99567 AP003484.1-201ENST00000530974 250 ntBASIC1.66□□□□□ -2.14
NUP88Q99567 AC008133.2-201ENST00000624540 351 ntBASIC1.66□□□□□ -2.14
NUP88Q99567 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.66□□□□□ -2.14
NUP88Q99567 SNORA25.9-201ENST00000365087 128 ntBASIC1.65□□□□□ -2.15
NUP88Q99567 RNU6-997P-201ENST00000384725 107 ntBASIC1.65□□□□□ -2.15
NUP88Q99567 MIR499A-201ENST00000384903 122 ntBASIC1.65□□□□□ -2.15
NUP88Q99567 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.65□□□□□ -2.15
NUP88Q99567 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.65□□□□□ -2.15
NUP88Q99567 RNU6-682P-201ENST00000363843 106 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 SNORA1-201ENST00000384107 130 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 SNORA51.10-201ENST00000384418 136 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 Y_RNA.508-201ENST00000384502 114 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 AF228730.3-201ENST00000436691 102 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 RNU1-98P-201ENST00000458992 160 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 RNU7-41P-201ENST00000515917 61 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 SNORA18.4-201ENST00000516440 124 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 SNORD36C-201ENST00000516733 66 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 RNU6-165P-201ENST00000517170 99 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 AC090821.2-201ENST00000523552 176 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 AL096861.1-201ENST00000610899 123 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 AL157834.3-201ENST00000615543 103 ntBASIC1.64□□□□□ -2.15
NUP88Q99567 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.64□□□□□ -2.15
NUP88Q99567 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.64□□□□□ -2.15
NUP88Q99567 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.63□□□□□ -2.15
NUP88Q99567 SNORA25.7-201ENST00000364375 127 ntBASIC1.63□□□□□ -2.15
NUP88Q99567 Y_RNA.240-201ENST00000364469 95 ntBASIC1.63□□□□□ -2.15
NUP88Q99567 RNU6-1189P-201ENST00000383958 107 ntBASIC1.63□□□□□ -2.15
NUP88Q99567 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.63□□□□□ -2.15
NUP88Q99567 RNU7-67P-201ENST00000459003 62 ntBASIC1.63□□□□□ -2.15
NUP88Q99567 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
NUP88Q99567 RNA5SP48-201ENST00000363969 126 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 Y_RNA.337-201ENST00000365312 102 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 Y_RNA.410-201ENST00000383992 113 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 SNORA70.7-201ENST00000384159 133 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 Y_RNA.542-201ENST00000384641 111 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.62□□□□□ -2.15
NUP88Q99567 AC243994.1-201ENST00000618627 109 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 MIR4251-201ENST00000635819 61 ntBASIC1.62□□□□□ -2.15
NUP88Q99567 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
NUP88Q99567 AL442644.1-201ENST00000454390 3105 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms