Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 Y_RNA.230-201ENST00000364348 109 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-1.13□□□□□ -2.59
CCDC42Q96M95 SNORA36B-201ENST00000410438 131 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 RNU7-96P-201ENST00000459535 64 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 AC091951.2-201ENST00000500762 203 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 AL162413.1-201ENST00000603198 110 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 AC022140.2-201ENST00000623500 188 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 AL391099.1-201ENST00000624635 187 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 MIR6863-201ENST00000636112 90 ntBASIC-1.13□□□□□ -2.59
CCDC42Q96M95 MTND4P28-201ENST00000426217 387 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 RNU6-864P-201ENST00000516256 108 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 AL512360.1-201ENST00000555346 234 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 AC141846.1-201ENST00000568348 142 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 MIR4636-201ENST00000582271 80 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 AL360085.1-201ENST00000604713 532 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 MIR6717-201ENST00000622747 73 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 MIR3662-201ENST00000637030 95 ntBASIC-1.14□□□□□ -2.59
CCDC42Q96M95 Y_RNA.30-201ENST00000362572 97 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 RNU6-653P-201ENST00000363074 106 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 RNU6-332P-201ENST00000391193 108 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 SNORA26.6-201ENST00000391256 115 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 MTATP6P17-201ENST00000431030 672 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 RNU6-998P-201ENST00000515894 101 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 Y_RNA.695-201ENST00000516715 107 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 SNORA25.16-201ENST00000516741 121 ntBASIC-1.15□□□□□ -2.59
CCDC42Q96M95 RNU6-908P-201ENST00000410160 94 ntBASIC-1.16□□□□□ -2.6
CCDC42Q96M95 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.16□□□□□ -2.6
CCDC42Q96M95 RNU6-1088P-201ENST00000516850 104 ntBASIC-1.16□□□□□ -2.6
CCDC42Q96M95 RNU6-273P-201ENST00000516937 96 ntBASIC-1.16□□□□□ -2.6
CCDC42Q96M95 NBR2-204ENST00000587322 63 ntBASIC-1.16□□□□□ -2.6
CCDC42Q96M95 RNU4-73P-201ENST00000363164 141 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 RNU6-949P-201ENST00000384040 107 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 MIR604-201ENST00000384880 94 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 Y_RNA.587-201ENST00000391210 103 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 SNORD115-47-201ENST00000391226 86 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 AC024067.1-201ENST00000426199 223 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 MTND1P2-201ENST00000430604 821 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 RNU6-956P-201ENST00000458868 103 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 RNU6-1281P-201ENST00000516223 105 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 RNU6-566P-201ENST00000516790 107 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 MTND3P12-201ENST00000559068 328 ntBASIC-1.17□□□□□ -2.6
CCDC42Q96M95 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-1.17□□□□□ -2.6
CCDC42Q96M95 Y_RNA.2-201ENST00000362330 96 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 SNORD114-14-201ENST00000362723 75 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 SNORA63.5-201ENST00000363548 123 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 AC244505.6-201ENST00000452829 130 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 AC023449.1-201ENST00000454464 154 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 RNU7-149P-201ENST00000516739 59 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 RN7SKP295-201ENST00000517264 153 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 AL359880.1-201ENST00000621879 266 ntBASIC-1.18□□□□□ -2.6
CCDC42Q96M95 Y_RNA.7-201ENST00000362352 102 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 Y_RNA.552-201ENST00000384665 112 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 SNORD41.1-201ENST00000391000 69 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 SNORD110-201ENST00000408189 75 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 RNA5SP261-201ENST00000410536 106 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 RNU6-735P-201ENST00000410612 107 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 SNORD36C-201ENST00000516733 66 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 RNU7-161P-201ENST00000517289 62 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 AC122108.2-201ENST00000611946 526 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 AC073114.1-201ENST00000612027 490 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 MIR1244-1-201ENST00000612829 85 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 MIR1244-3-201ENST00000635744 85 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 MIR1244-2-201ENST00000636449 85 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 MIR1244-4-202ENST00000636813 85 ntBASIC-1.19□□□□□ -2.6
CCDC42Q96M95 RNU6-451P-201ENST00000362921 107 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 RNU6-1138P-201ENST00000365359 106 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 RNU6-597P-201ENST00000365620 102 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 AC006210.1-201ENST00000424882 111 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-1.2□□□□□ -2.6
CCDC42Q96M95 MIR2053-201ENST00000459295 91 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 RNU6-1170P-201ENST00000515974 106 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 SNORA25.13-201ENST00000516395 103 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 RNU2-31P-201ENST00000516954 155 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 AC011373.1-201ENST00000607270 237 ntBASIC-1.2□□□□□ -2.6
CCDC42Q96M95 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-1.2□□□□□ -2.6
CCDC42Q96M95 U8.6-201ENST00000364939 135 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 Y_RNA.473-201ENST00000384333 102 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.21□□□□□ -2.6
CCDC42Q96M95 RNU7-141P-201ENST00000459304 62 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 AC005357.1-201ENST00000588399 301 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 DLEU2_1.1-201ENST00000612089 120 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 DLEU2_1.2-201ENST00000614667 120 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 AC092794.2-201ENST00000620933 563 ntBASIC-1.21□□□□□ -2.6
CCDC42Q96M95 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.21□□□□□ -2.6
CCDC42Q96M95 RNY3P3-201ENST00000363816 102 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 RNU6-483P-201ENST00000384088 108 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 Y_RNA.436-201ENST00000384097 102 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 RNU6-1013P-201ENST00000384180 107 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 RNY3P4-201ENST00000384428 101 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 MIR224-201ENST00000384889 81 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 MIR516B1-201ENST00000385211 90 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 MT-TQ-201ENST00000387372 72 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 SNORD78.2-201ENST00000391076 69 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 Y_RNA.594-201ENST00000410373 140 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 BX276092.1-201ENST00000427368 251 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 DEFB117-201ENST00000602356 141 ntBASIC-1.22□□□□□ -2.6
CCDC42Q96M95 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 201.8 ms