Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 Y_RNA.229-201ENST00000364347 113 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 Y_RNA.241-201ENST00000364470 117 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-740P-201ENST00000364734 105 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-1227P-201ENST00000383981 107 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-639P-201ENST00000384074 107 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 SNORD61-201ENST00000384252 73 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 MIR508-201ENST00000384857 115 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 MIR518F-201ENST00000384973 87 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 MIR548J-201ENST00000408833 112 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-613P-201ENST00000410412 108 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-994P-201ENST00000410507 111 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-847P-201ENST00000411115 108 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-693P-201ENST00000516134 107 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNA5SP220-201ENST00000516298 104 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNA5SP121-201ENST00000516537 101 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-1007P-201ENST00000516586 107 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 RNU6-1270P-201ENST00000517128 108 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 AC133485.1-201ENST00000567176 124 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 AC138907.6-201ENST00000568401 126 ntBASIC0.63□□□□□ -2.31
VPS39Q96JC1 Y_RNA.152-201ENST00000363578 100 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 Y_RNA.275-201ENST00000364726 110 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6-396P-201ENST00000365369 105 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6-1067P-201ENST00000384752 107 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 MIR626-201ENST00000385032 94 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 MIR518E-201ENST00000385252 88 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 MT-TW-201ENST00000387382 68 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6-913P-201ENST00000390913 95 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 SNORD83.1-201ENST00000411362 77 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 AC023449.1-201ENST00000454464 154 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 SCARNA8-201ENST00000515924 131 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6-1143P-201ENST00000516125 104 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 SNORA18.4-201ENST00000516440 124 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 SNORD36C-201ENST00000516733 66 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 RNU6-453P-201ENST00000516819 85 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 AP003072.1-201ENST00000531740 145 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 AC004817.2-201ENST00000561794 651 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 AC044792.1-201ENST00000593294 196 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 uc_338.6-201ENST00000613544 171 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 Y_RNA.802-201ENST00000614892 130 ntBASIC0.62□□□□□ -2.31
VPS39Q96JC1 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS39Q96JC1 Y_RNA.91-201ENST00000363042 107 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 SNORD115-28-201ENST00000363931 81 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 snoU2_19.4-201ENST00000364329 80 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 SNORA1.2-201ENST00000365189 134 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 Y_RNA.483-201ENST00000384380 101 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 MIR526A2-201ENST00000390198 65 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
VPS39Q96JC1 Y_RNA.622-201ENST00000411091 108 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 HMGN1P33-201ENST00000432945 451 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.61□□□□□ -2.31
VPS39Q96JC1 RNU7-67P-201ENST00000459003 62 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 RNU6-635P-201ENST00000516651 102 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 MIR2115-201ENST00000516657 100 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 RNU6-1223P-201ENST00000517124 104 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 uc_338.17-201ENST00000619633 179 ntBASIC0.61□□□□□ -2.31
VPS39Q96JC1 Y_RNA.37-201ENST00000362606 108 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 MIR92A1-201ENST00000385233 78 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 RNU6-1228P-201ENST00000391014 107 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 AF228730.3-201ENST00000436691 102 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.6□□□□□ -2.31
VPS39Q96JC1 AL138752.1-201ENST00000452964 351 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 SNRPGP8-201ENST00000454064 226 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 TRBVB-201ENST00000477100 408 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 AC100767.1-201ENST00000528178 123 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 AC004812.1-201ENST00000540773 146 ntBASIC0.6□□□□□ -2.31
VPS39Q96JC1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS39Q96JC1 Y_RNA.44-201ENST00000362676 108 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 Y_RNA.168-201ENST00000363740 102 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 RNY1P8-201ENST00000383970 114 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 SNORA24-201ENST00000384096 131 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 SNORA8.3-201ENST00000384679 139 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 MIR1827-201ENST00000408549 66 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 MTND4LP30-201ENST00000454092 297 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 RNU6-1110P-201ENST00000516462 101 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 AP003484.1-201ENST00000530974 250 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 MIR4643-201ENST00000577473 78 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 AC011195.1-201ENST00000578177 177 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.59□□□□□ -2.31
VPS39Q96JC1 AL136317.1-201ENST00000612653 226 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 AC134878.1-201ENST00000619901 243 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 MIR6734-201ENST00000621166 68 ntBASIC0.59□□□□□ -2.31
VPS39Q96JC1 Y_RNA.66-201ENST00000362862 102 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 RNU6-580P-201ENST00000365159 107 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 RNU6-1190P-201ENST00000410811 104 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 AC244098.3-201ENST00000424803 96 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 AC067940.1-201ENST00000458411 300 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 RNU6-561P-201ENST00000516222 102 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 AC018659.1-201ENST00000551083 169 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 AL442663.2-201ENST00000554385 511 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 MIR5000-201ENST00000577717 103 ntBASIC0.58□□□□□ -2.32
VPS39Q96JC1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
VPS39Q96JC1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
VPS39Q96JC1 MIR1-1-201ENST00000362147 71 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-34-201ENST00000362441 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-12-201ENST00000362583 82 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 213.7 ms