Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNORD115-11-201ENST00000363616 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-5-201ENST00000363633 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-39-201ENST00000363694 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-4-201ENST00000363810 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-16-201ENST00000363887 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-28-201ENST00000363931 81 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-6-201ENST00000363942 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-42-201ENST00000364273 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.241-201ENST00000364470 117 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.276-201ENST00000364732 109 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-15-201ENST00000364809 81 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 RNU5E-4P-201ENST00000364931 120 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 RNU6-867P-201ENST00000364956 107 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-1-201ENST00000364961 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-26-201ENST00000365067 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-10-201ENST00000365073 81 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 RNU6-934P-201ENST00000365154 107 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-43-201ENST00000365503 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-36-201ENST00000365629 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 MIR526A2-201ENST00000390198 65 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 AF228730.3-201ENST00000436691 102 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 MTCYBP6-201ENST00000441810 138 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 snoU13.16-201ENST00000459350 104 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SCARNA8-201ENST00000515924 131 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 RNU6-958P-201ENST00000516995 106 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 AP003733.2-201ENST00000529409 171 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 MIR4724-201ENST00000579485 89 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 MIR4264-201ENST00000583520 66 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-40-201ENST00000606510 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.24-201ENST00000362508 103 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.91-201ENST00000363042 107 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.191-201ENST00000363972 113 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.229-201ENST00000364347 113 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.293-201ENST00000364908 93 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 SNORA25.9-201ENST00000365087 128 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU6-484P-201ENST00000384016 107 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU6-211P-201ENST00000384047 107 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MIR520H-201ENST00000385126 88 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MT-TT-201ENST00000387460 66 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MIR1276-201ENST00000408707 83 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 AC092628.1-201ENST00000436250 252 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 AC067940.1-201ENST00000458411 300 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU7-56P-201ENST00000458744 62 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.638-201ENST00000459374 113 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU6-693P-201ENST00000516134 107 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU6-1270P-201ENST00000517128 108 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.721-201ENST00000517207 102 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 RNU6-988P-201ENST00000519081 107 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MIR4771-2-201ENST00000577758 74 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MIR4771-1-201ENST00000582617 74 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 AL512605.2-201ENST00000592972 256 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 AC008608.1-201ENST00000603910 127 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 AC134878.1-201ENST00000619901 243 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 Z97988.1-201ENST00000637697 135 ntBASIC0.41□□□□□ -2.34
CCDC54Q8NEL0 MIR367-201ENST00000362299 68 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNA5SP347-201ENST00000362445 119 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 Y_RNA.152-201ENST00000363578 100 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 snoU2_19.4-201ENST00000364329 80 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNU6-1237P-201ENST00000384777 107 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNU6-1203P-201ENST00000410703 110 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNU6-602P-201ENST00000411155 105 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AC022028.1-201ENST00000412054 408 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNU7-73P-201ENST00000458743 63 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 SERF1AP1-201ENST00000514575 187 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 SNORA68.3-201ENST00000515906 83 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 RNU6-1338P-201ENST00000516328 91 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 DEFB108E-201ENST00000524692 240 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AC100767.1-201ENST00000528178 123 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AC018659.1-201ENST00000551083 169 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 MIR4676-201ENST00000583078 72 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 AP001282.2-201ENST00000616149 309 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.4□□□□□ -2.35
CCDC54Q8NEL0 MIR18A-201ENST00000362310 71 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 SNORA25.1-201ENST00000362326 128 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 RNU6-888P-201ENST00000363010 101 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 Y_RNA.376-201ENST00000365638 108 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 Y_RNA.460-201ENST00000384255 102 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 Y_RNA.512-201ENST00000384518 102 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 MIR520F-201ENST00000384824 87 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 MIR626-201ENST00000385032 94 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 SNORA40.5-201ENST00000391061 128 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 RNU7-62P-201ENST00000458856 62 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 RNU7-67P-201ENST00000459003 62 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 RNU6-453P-201ENST00000516819 85 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 SNORA40.15-201ENST00000516884 107 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 SCARNA24.2-201ENST00000516968 130 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 AP001094.1-201ENST00000579805 193 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 AL136317.1-201ENST00000612653 226 ntBASIC0.39□□□□□ -2.35
CCDC54Q8NEL0 AC010332.2-201ENST00000613083 1904 ntBASIC0.38□□□□□ -2.35
CCDC54Q8NEL0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
CCDC54Q8NEL0 Y_RNA.275-201ENST00000364726 110 ntBASIC0.38□□□□□ -2.35
CCDC54Q8NEL0 SNORD24-201ENST00000383884 75 ntBASIC0.38□□□□□ -2.35
CCDC54Q8NEL0 SNORA36.2-201ENST00000384004 127 ntBASIC0.38□□□□□ -2.35
CCDC54Q8NEL0 SNORA50A-201ENST00000384225 134 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms