Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RNA5SP496-201ENST00000391240 109 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 AC063976.4-201ENST00000421971 163 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 AC023449.1-201ENST00000454464 154 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 MTCO2P24-201ENST00000515611 426 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 RNU6-351P-201ENST00000516097 100 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 RNU6-1007P-201ENST00000516586 107 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 PRELID3BP2-201ENST00000605362 201 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 AC006441.5-201ENST00000612680 209 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 AC099654.10-201ENST00000640395 161 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.133-201ENST00000363428 110 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.149-201ENST00000363558 117 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 SNORA8.3-201ENST00000384679 139 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 MIR15B-201ENST00000385045 98 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 U8.17-201ENST00000391292 132 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 RNU2-38P-201ENST00000410856 79 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.01□□□□□ -2.25
NPHP3Q7Z494 UBL5P1-201ENST00000507979 193 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 SNORD79.1-201ENST00000516069 84 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 RNU7-43P-201ENST00000516554 64 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 HSPE1P19-201ENST00000603327 295 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 AC012676.2-201ENST00000619258 186 ntBASIC1.01□□□□□ -2.25
NPHP3Q7Z494 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
NPHP3Q7Z494 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
NPHP3Q7Z494 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
NPHP3Q7Z494 MIR330-201ENST00000362196 94 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.54-201ENST00000362766 105 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.229-201ENST00000364347 113 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.277-201ENST00000364754 102 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.486-201ENST00000384398 107 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 MIR626-201ENST00000385032 94 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 MT-TT-201ENST00000387460 66 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 SNORA75.2-201ENST00000391138 150 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 SNORA75.3-201ENST00000391231 150 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.590-201ENST00000410140 107 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1□□□□□ -2.25
NPHP3Q7Z494 SNORD2.1-201ENST00000458762 69 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.666-201ENST00000516187 112 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 RNU6-830P-201ENST00000516353 107 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 RNU7-25P-201ENST00000516544 62 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 MIR8087-201ENST00000612745 78 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1□□□□□ -2.25
NPHP3Q7Z494 U6.104-201ENST00000637979 90 ntBASIC1□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.82-201ENST00000363000 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.92-201ENST00000363043 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.235-201ENST00000364412 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.306-201ENST00000365015 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.312-201ENST00000365089 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.322-201ENST00000365151 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 MIR19B1-201ENST00000384829 87 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 AL078595.1-201ENST00000404458 226 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 AC002429.1-201ENST00000437672 148 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.99□□□□□ -2.25
NPHP3Q7Z494 SNORD127-201ENST00000458892 86 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.650-201ENST00000459002 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 RNU4-57P-201ENST00000515980 135 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 SNORD77.4-201ENST00000516158 81 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.679-201ENST00000516416 91 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.777-201ENST00000516982 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 AC100767.1-201ENST00000528178 123 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 AC004812.1-201ENST00000540773 146 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.771-201ENST00000598668 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.789-201ENST00000622480 102 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 MIR6866-201ENST00000638146 69 ntBASIC0.99□□□□□ -2.25
NPHP3Q7Z494 RNA5SP347-201ENST00000362445 119 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 RNA5SP257-201ENST00000363023 116 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 RNA5SP264-201ENST00000363115 107 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 snoU2_19.4-201ENST00000364329 80 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.416-201ENST00000384014 113 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.518-201ENST00000384552 113 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.547-201ENST00000384654 119 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 SNORD12-201ENST00000391002 90 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 MIR1185-1-201ENST00000408598 86 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 MTCYBP9-201ENST00000431021 303 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.98□□□□□ -2.25
NPHP3Q7Z494 RNU6-1045P-201ENST00000516321 107 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 RNU6-453P-201ENST00000516819 85 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 AP003716.2-201ENST00000528260 108 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 MIR4719-201ENST00000585233 84 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 AL353621.2-201ENST00000605340 133 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 AL365265.1-201ENST00000621045 234 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 AC008163.1-202ENST00000636004 2889 ntBASIC0.98□□□□□ -2.25
NPHP3Q7Z494 MIR103A2-201ENST00000362154 78 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.85-201ENST00000363014 111 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 RNU6-1138P-201ENST00000365359 106 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 SNORA80D-201ENST00000384488 135 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 MIR548O-201ENST00000408583 114 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 SNORD124-201ENST00000459577 104 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.97□□□□□ -2.25
NPHP3Q7Z494 SCARNA8-201ENST00000515924 131 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 RNA5SP121-201ENST00000516537 101 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 MIR4282-201ENST00000583613 67 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 AL391516.1-201ENST00000554380 2449 ntBASIC0.97□□□□□ -2.25
NPHP3Q7Z494 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.76-201ENST00000362931 109 ntBASIC0.96□□□□□ -2.26
NPHP3Q7Z494 Y_RNA.330-201ENST00000365230 109 ntBASIC0.96□□□□□ -2.26
NPHP3Q7Z494 Y_RNA.352-201ENST00000365439 102 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms