Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Y_RNA.544-201ENST00000384650 113 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 MIR515-2-201ENST00000384883 83 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 MIR515-1-201ENST00000384884 83 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AL445646.1-201ENST00000431784 216 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AC009238.1-201ENST00000442165 424 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AC009237.6-201ENST00000446969 424 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 HMGN2P23-201ENST00000456759 269 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 SNORD45.4-201ENST00000516629 73 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.22□□□□□ -2.05
USP39Q53GS9 AC084364.2-201ENST00000546924 395 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AC022523.2-201ENST00000561045 150 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 MIR4529-201ENST00000578110 78 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AC021443.1-201ENST00000604478 211 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 AC022513.1-201ENST00000624512 117 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.22□□□□□ -2.05
USP39Q53GS9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP39Q53GS9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
USP39Q53GS9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.05
USP39Q53GS9 SNORD14E-201ENST00000364009 85 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 snoU2-30.1-201ENST00000365012 70 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 RNU6-1113P-201ENST00000384348 107 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 RNU6-160P-201ENST00000384591 107 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 MIR802-201ENST00000390235 94 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 AL356379.1-201ENST00000414105 126 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 SNORA31.4-201ENST00000516049 129 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 RNA5SP200-201ENST00000516360 103 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 Y_RNA.676-201ENST00000516393 96 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 MIR3169-201ENST00000578032 83 ntBASIC2.21□□□□□ -2.06
USP39Q53GS9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.21□□□□□ -2.06
USP39Q53GS9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP39Q53GS9 AL442644.1-201ENST00000454390 3105 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 AC131280.1-202ENST00000624067 4211 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNU6-1084P-201ENST00000362498 107 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNA5SP493-201ENST00000364115 91 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 Y_RNA.336-201ENST00000365307 109 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 SNORA80E-201ENST00000384744 137 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNA5SP233-201ENST00000459153 113 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNU7-164P-201ENST00000459221 62 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNU2-35P-201ENST00000516446 142 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 RNU6-295P-201ENST00000516901 104 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 HSPE1P19-201ENST00000603327 295 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 AC005336.3-201ENST00000623833 2679 ntBASIC2.2□□□□□ -2.06
USP39Q53GS9 Y_RNA.78-201ENST00000362970 110 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 RNU1-133P-201ENST00000364867 167 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 Y_RNA.558-201ENST00000384685 113 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 MIR548D2-201ENST00000384955 97 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 RNU6-904P-201ENST00000516206 101 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 RNA5SP137-201ENST00000516833 135 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 RNU6-158P-201ENST00000517104 100 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 AP003484.1-201ENST00000530974 250 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 MIR4305-201ENST00000583252 102 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 AC091932.4-201ENST00000623386 200 ntBASIC2.19□□□□□ -2.06
USP39Q53GS9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP39Q53GS9 MIRLET7G-201ENST00000362280 84 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 Y_RNA.351-201ENST00000365436 96 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 RNY1P7-201ENST00000384743 110 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 SNORA26.2-201ENST00000390922 122 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 RNA5SP482-201ENST00000391269 118 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 U8.17-201ENST00000391292 132 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 SNORA26.9-201ENST00000391322 122 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.18□□□□□ -2.06
USP39Q53GS9 AC245047.3-201ENST00000429428 127 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 MTATP8P2-201ENST00000435212 202 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 AC087499.4-201ENST00000448505 178 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 AC104435.1-201ENST00000483483 166 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 Y_RNA.818-201ENST00000618813 71 ntBASIC2.18□□□□□ -2.06
USP39Q53GS9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USP39Q53GS9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USP39Q53GS9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USP39Q53GS9 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP39Q53GS9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
USP39Q53GS9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP39Q53GS9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
USP39Q53GS9 MIRLET7C-201ENST00000362160 84 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 MIR759-201ENST00000390224 91 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 RNA5SP109-201ENST00000391010 116 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC019129.1-201ENST00000403786 261 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AL023284.1-201ENST00000403956 276 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.17□□□□□ -2.06
USP39Q53GS9 RNU6-970P-201ENST00000516312 107 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 MIR514B-201ENST00000516774 80 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.17□□□□□ -2.06
USP39Q53GS9 MIR3683-201ENST00000580847 82 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC062037.1-201ENST00000605302 128 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AL442128.1-201ENST00000615151 90 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC015726.2-201ENST00000620112 122 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USP39Q53GS9 AL596211.1-201ENST00000569873 2277 ntBASIC2.17□□□□□ -2.06
USP39Q53GS9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
USP39Q53GS9 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.16□□□□□ -2.06
USP39Q53GS9 AC114811.1-201ENST00000507207 168 ntBASIC2.16□□□□□ -2.06
USP39Q53GS9 SNORA18.7-201ENST00000516910 131 ntBASIC2.16□□□□□ -2.06
USP39Q53GS9 RNU7-70P-201ENST00000516941 66 ntBASIC2.16□□□□□ -2.06
USP39Q53GS9 RNU6-1116P-201ENST00000517269 99 ntBASIC2.16□□□□□ -2.06
USP39Q53GS9 AL162726.3-218ENST00000636401 95 ntBASIC2.16□□□□□ -2.06
USP39Q53GS9 Y_RNA.494-201ENST00000384432 111 ntBASIC2.15□□□□□ -2.07
USP39Q53GS9 U8.13-201ENST00000390842 128 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 212.9 ms