Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MIR5692C2-201ENST00000577959 77 ntBASIC0.34□□□□□ -2.36
PKNOX1P55347 AL355297.3-201ENST00000604082 446 ntBASIC0.34□□□□□ -2.36
PKNOX1P55347 Y_RNA.804-201ENST00000615262 101 ntBASIC0.34□□□□□ -2.36
PKNOX1P55347 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.34□□□□□ -2.36
PKNOX1P55347 RNU4-45P-201ENST00000365469 141 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 MIR518F-201ENST00000384973 87 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 PMCHL1-202ENST00000423102 261 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.33□□□□□ -2.36
PKNOX1P55347 AC087499.4-201ENST00000448505 178 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.33□□□□□ -2.36
PKNOX1P55347 RNU7-73P-201ENST00000458743 63 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 MIR8055-201ENST00000610739 97 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 Z97988.1-201ENST00000637697 135 ntBASIC0.33□□□□□ -2.36
PKNOX1P55347 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 MIR367-201ENST00000362299 68 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 Y_RNA.14-201ENST00000362415 103 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 RNU6-290P-201ENST00000365212 101 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 Y_RNA.419-201ENST00000384041 102 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 RNU6-342P-201ENST00000384521 104 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 RNA5SP247-201ENST00000411181 105 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 HMGN1P33-201ENST00000432945 451 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 MTCO2P24-201ENST00000515611 426 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 RNU6-1223P-201ENST00000517124 104 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.32□□□□□ -2.36
PKNOX1P55347 MIR4724-201ENST00000579485 89 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 AL162730.1-201ENST00000605734 292 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 AC090971.5-201ENST00000621102 293 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 AC010332.2-201ENST00000613083 1904 ntBASIC0.32□□□□□ -2.36
PKNOX1P55347 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.31□□□□□ -2.36
PKNOX1P55347 Y_RNA.37-201ENST00000362606 108 ntBASIC0.31□□□□□ -2.36
PKNOX1P55347 snoU2_19.2-201ENST00000363024 80 ntBASIC0.31□□□□□ -2.36
PKNOX1P55347 Y_RNA.541-201ENST00000384640 113 ntBASIC0.31□□□□□ -2.36
PKNOX1P55347 SNORA40.5-201ENST00000391061 128 ntBASIC0.31□□□□□ -2.36
PKNOX1P55347 MIR1252-201ENST00000408861 65 ntBASIC0.31□□□□□ -2.36
PKNOX1P55347 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.31□□□□□ -2.36
PKNOX1P55347 AC090625.1-201ENST00000357130 210 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORA63C-201ENST00000364578 129 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 Y_RNA.293-201ENST00000364908 93 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 Y_RNA.394-201ENST00000383942 103 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORD61-201ENST00000384252 73 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 RNU6-662P-201ENST00000384253 104 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORA27-201ENST00000384323 126 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORD38B-201ENST00000384690 67 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 MT-TD-201ENST00000387419 68 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 RNU6-693P-201ENST00000516134 107 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORD36C-201ENST00000516733 66 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 RNU2-31P-201ENST00000516954 155 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 MIR4662B-201ENST00000579498 81 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 AC008608.1-201ENST00000603910 127 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 AL008718.3-201ENST00000610217 321 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 SNORD38B-202ENST00000625943 69 ntBASIC0.3□□□□□ -2.36
PKNOX1P55347 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.3□□□□□ -2.36
PKNOX1P55347 Y_RNA.217-201ENST00000364214 105 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 RNU4-10P-201ENST00000364383 140 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 SNORD24-201ENST00000383884 75 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 MIR215-201ENST00000384858 110 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 MIR938-201ENST00000401216 83 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 RNU6-1165P-201ENST00000410119 107 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 MIR18B-201ENST00000454574 71 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 Y_RNA.641-201ENST00000459414 105 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 RPS29P24-201ENST00000486345 171 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 MIR6513-201ENST00000621188 64 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 AC243829.3-201ENST00000622177 108 ntBASIC0.29□□□□□ -2.36
PKNOX1P55347 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
PKNOX1P55347 RNU6-326P-201ENST00000365480 107 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 RNU6-42P-201ENST00000384165 107 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 MIR588-201ENST00000384900 83 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 MIR526A2-201ENST00000390198 65 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 RNU6-1190P-201ENST00000410811 104 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 RNU6-602P-201ENST00000411155 105 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 RPL21P38-201ENST00000418090 167 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 ELOCP20-201ENST00000422460 345 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 RNU7-53P-201ENST00000516705 60 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 AC090897.1-201ENST00000580909 226 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 AC243829.6-201ENST00000612652 106 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 AC092634.7-201ENST00000621022 103 ntBASIC0.28□□□□□ -2.36
PKNOX1P55347 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
PKNOX1P55347 SNORA25.1-201ENST00000362326 128 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RNU6-888P-201ENST00000363010 101 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
PKNOX1P55347 Y_RNA.389-201ENST00000383924 113 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 MIR216A-201ENST00000385063 110 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 MIR563-201ENST00000385080 79 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 MIR125B2-201ENST00000385128 89 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 MIR1287-201ENST00000408492 90 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 SNORD100-201ENST00000408573 76 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RNU6-101P-201ENST00000410323 104 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 MTND4LP30-201ENST00000454092 297 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RNU7-102P-201ENST00000458948 62 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 snoU13.2-201ENST00000459201 104 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 AC002350.1-201ENST00000490759 375 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 RNU6-1270P-201ENST00000517128 108 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.27□□□□□ -2.37
PKNOX1P55347 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 snoU18.1-201ENST00000629629 71 ntBASIC0.27□□□□□ -2.37
PKNOX1P55347 Y_RNA.26-201ENST00000362539 101 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 Y_RNA.28-201ENST00000362554 111 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 Y_RNA.214-201ENST00000364201 112 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 RNA5SP517-201ENST00000364724 117 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms