Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5SP289-201ENST00000362332 137 ntBASIC2.43□□□□□ -2.02
LIG3P49916 Y_RNA.213-201ENST00000364178 111 ntBASIC2.43□□□□□ -2.02
LIG3P49916 RNU6-301P-201ENST00000384277 107 ntBASIC2.43□□□□□ -2.02
LIG3P49916 RNA5SP508-201ENST00000411327 119 ntBASIC2.43□□□□□ -2.02
LIG3P49916 RNU7-164P-201ENST00000459221 62 ntBASIC2.43□□□□□ -2.02
LIG3P49916 SNORD123-201ENST00000459473 70 ntBASIC2.43□□□□□ -2.02
LIG3P49916 UBL5P3-201ENST00000475112 231 ntBASIC2.43□□□□□ -2.02
LIG3P49916 MIR3683-201ENST00000580847 82 ntBASIC2.43□□□□□ -2.02
LIG3P49916 MIR4305-201ENST00000583252 102 ntBASIC2.43□□□□□ -2.02
LIG3P49916 RNA5SP276-201ENST00000362580 94 ntBASIC2.42□□□□□ -2.02
LIG3P49916 Y_RNA.198-201ENST00000364013 98 ntBASIC2.42□□□□□ -2.02
LIG3P49916 RNU6-755P-201ENST00000364400 103 ntBASIC2.42□□□□□ -2.02
LIG3P49916 RNU4-16P-201ENST00000364737 141 ntBASIC2.42□□□□□ -2.02
LIG3P49916 Y_RNA.298-201ENST00000364960 107 ntBASIC2.42□□□□□ -2.02
LIG3P49916 MIR759-201ENST00000390224 91 ntBASIC2.42□□□□□ -2.02
LIG3P49916 RNU2-11P-201ENST00000459191 187 ntBASIC2.42□□□□□ -2.02
LIG3P49916 AC104435.1-201ENST00000483483 166 ntBASIC2.42□□□□□ -2.02
LIG3P49916 AC234781.5-201ENST00000508429 271 ntBASIC2.42□□□□□ -2.02
LIG3P49916 AC008413.1-201ENST00000511864 177 ntBASIC2.42□□□□□ -2.02
LIG3P49916 FAM106DP-201ENST00000586416 501 ntBASIC2.42□□□□□ -2.02
LIG3P49916 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.41□□□□□ -2.02
LIG3P49916 RNA5SP212-201ENST00000391223 107 ntBASIC2.41□□□□□ -2.02
LIG3P49916 RNU6-412P-201ENST00000516434 106 ntBASIC2.41□□□□□ -2.02
LIG3P49916 SUMO2P16-201ENST00000519475 264 ntBASIC2.41□□□□□ -2.02
LIG3P49916 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.41□□□□□ -2.02
LIG3P49916 MIR6840-201ENST00000611937 71 ntBASIC2.41□□□□□ -2.02
LIG3P49916 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.41□□□□□ -2.02
LIG3P49916 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
LIG3P49916 RNU6-457P-201ENST00000363999 107 ntBASIC2.4□□□□□ -2.03
LIG3P49916 RNU4-52P-201ENST00000384209 138 ntBASIC2.4□□□□□ -2.03
LIG3P49916 RNU6-1067P-201ENST00000384752 107 ntBASIC2.4□□□□□ -2.03
LIG3P49916 HMGN2P38-201ENST00000423806 265 ntBASIC2.4□□□□□ -2.03
LIG3P49916 RNU7-67P-201ENST00000459003 62 ntBASIC2.4□□□□□ -2.03
LIG3P49916 AC090255.1-201ENST00000495779 349 ntBASIC2.4□□□□□ -2.03
LIG3P49916 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.4□□□□□ -2.03
LIG3P49916 AC026436.1-201ENST00000510537 270 ntBASIC2.4□□□□□ -2.03
LIG3P49916 RNU7-53P-201ENST00000516705 60 ntBASIC2.4□□□□□ -2.03
LIG3P49916 AC007012.1-201ENST00000567192 175 ntBASIC2.4□□□□□ -2.03
LIG3P49916 MIR5694-201ENST00000581190 76 ntBASIC2.4□□□□□ -2.03
LIG3P49916 AC046143.2-201ENST00000609789 160 ntBASIC2.4□□□□□ -2.03
LIG3P49916 MIR1291-201ENST00000627649 87 ntBASIC2.4□□□□□ -2.03
LIG3P49916 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
LIG3P49916 AC131280.1-202ENST00000624067 4211 ntBASIC2.4□□□□□ -2.03
LIG3P49916 AC008555.8-201ENST00000623602 2168 ntBASIC2.39□□□□□ -2.03
LIG3P49916 RNU6-203P-201ENST00000384038 104 ntBASIC2.39□□□□□ -2.03
LIG3P49916 RPS29P29-201ENST00000456396 171 ntBASIC2.39□□□□□ -2.03
LIG3P49916 RNU7-123P-201ENST00000515911 60 ntBASIC2.39□□□□□ -2.03
LIG3P49916 RNA5SP24-201ENST00000516478 95 ntBASIC2.39□□□□□ -2.03
LIG3P49916 MIR548AR-201ENST00000582191 57 ntBASIC2.39□□□□□ -2.03
LIG3P49916 HSPE1P19-201ENST00000603327 295 ntBASIC2.39□□□□□ -2.03
LIG3P49916 AC103810.6-201ENST00000606708 136 ntBASIC2.39□□□□□ -2.03
LIG3P49916 AL590808.1-201ENST00000618696 141 ntBASIC2.39□□□□□ -2.03
LIG3P49916 MIR203B-201ENST00000636080 86 ntBASIC2.39□□□□□ -2.03
LIG3P49916 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
LIG3P49916 AP000648.3-201ENST00000623539 4507 ntBASIC2.38□□□□□ -2.03
LIG3P49916 AC016717.2-201ENST00000609089 5141 ntBASIC2.38□□□□□ -2.03
LIG3P49916 RNU6-414P-201ENST00000363705 104 ntBASIC2.38□□□□□ -2.03
LIG3P49916 SNORD114-30-201ENST00000364448 72 ntBASIC2.38□□□□□ -2.03
LIG3P49916 SNORD28B-201ENST00000390993 75 ntBASIC2.38□□□□□ -2.03
LIG3P49916 RNA5SP338-201ENST00000410495 85 ntBASIC2.38□□□□□ -2.03
LIG3P49916 RN7SKP192-201ENST00000411291 327 ntBASIC2.38□□□□□ -2.03
LIG3P49916 SNORD53-201ENST00000579969 78 ntBASIC2.38□□□□□ -2.03
LIG3P49916 AC021613.1-201ENST00000623880 111 ntBASIC2.38□□□□□ -2.03
LIG3P49916 SNORA24-201ENST00000384096 131 ntBASIC2.37□□□□□ -2.03
LIG3P49916 RNU4-53P-201ENST00000410828 140 ntBASIC2.37□□□□□ -2.03
LIG3P49916 AC004965.1-201ENST00000413033 213 ntBASIC2.37□□□□□ -2.03
LIG3P49916 RPL23AP6-201ENST00000446637 472 ntBASIC2.37□□□□□ -2.03
LIG3P49916 RNU2-13P-201ENST00000515909 113 ntBASIC2.37□□□□□ -2.03
LIG3P49916 RNU6-958P-201ENST00000516995 106 ntBASIC2.37□□□□□ -2.03
LIG3P49916 SNORA74.3-201ENST00000517108 154 ntBASIC2.37□□□□□ -2.03
LIG3P49916 DEFB122-202ENST00000569013 197 ntBASIC2.37□□□□□ -2.03
LIG3P49916 MIR4448-201ENST00000584360 86 ntBASIC2.37□□□□□ -2.03
LIG3P49916 AC106754.2-201ENST00000623006 233 ntBASIC2.37□□□□□ -2.03
LIG3P49916 RNY4P6-201ENST00000363667 96 ntBASIC2.36□□□□□ -2.03
LIG3P49916 Y_RNA.281-201ENST00000364774 94 ntBASIC2.36□□□□□ -2.03
LIG3P49916 RNA5SP138-201ENST00000365098 114 ntBASIC2.36□□□□□ -2.03
LIG3P49916 MIR194-1-201ENST00000384892 85 ntBASIC2.36□□□□□ -2.03
LIG3P49916 RNA5SP144-201ENST00000410846 116 ntBASIC2.36□□□□□ -2.03
LIG3P49916 AL022718.1-201ENST00000412004 84 ntBASIC2.36□□□□□ -2.03
LIG3P49916 RNU6-717P-201ENST00000459076 104 ntBASIC2.36□□□□□ -2.03
LIG3P49916 RNU2-35P-201ENST00000516446 142 ntBASIC2.36□□□□□ -2.03
LIG3P49916 AC067747.1-201ENST00000608026 250 ntBASIC2.36□□□□□ -2.03
LIG3P49916 AC243994.1-201ENST00000618627 109 ntBASIC2.36□□□□□ -2.03
LIG3P49916 AC064859.1-201ENST00000624741 174 ntBASIC2.36□□□□□ -2.03
LIG3P49916 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
LIG3P49916 AC092881.1-201ENST00000638218 2733 ntBASIC2.35□□□□□ -2.03
LIG3P49916 SNORA16B-201ENST00000364674 135 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RNA5SP37-201ENST00000365420 130 ntBASIC2.35□□□□□ -2.03
LIG3P49916 Y_RNA.537-201ENST00000384626 109 ntBASIC2.35□□□□□ -2.03
LIG3P49916 SNORD12C-201ENST00000386307 89 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RNA5SP261-201ENST00000410536 106 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RNU6-893P-201ENST00000458841 100 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RN7SL429P-201ENST00000479090 223 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RN7SL489P-201ENST00000486185 223 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RN7SL327P-201ENST00000488659 223 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RNU6-917P-201ENST00000516294 104 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RNA5SP281-201ENST00000516504 135 ntBASIC2.35□□□□□ -2.03
LIG3P49916 MIR4679-2-201ENST00000578358 77 ntBASIC2.35□□□□□ -2.03
LIG3P49916 MIR4287-201ENST00000579398 78 ntBASIC2.35□□□□□ -2.03
LIG3P49916 MIR3152-201ENST00000579801 74 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms