Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.3□□□□□ -2.04
LIMS1P48059 AC095038.3-201ENST00000634439 195 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LIMS1P48059 AC092881.1-201ENST00000638218 2733 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LIMS1P48059 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.3□□□□□ -2.04
LIMS1P48059 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
LIMS1P48059 RNU4-36P-201ENST00000364294 144 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 SNORA63D-201ENST00000364359 132 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 SNORA70B-201ENST00000384210 135 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 Y_RNA.531-201ENST00000384589 121 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 MIR144-201ENST00000384886 86 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 MIR524-201ENST00000385242 87 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 MIR1261-201ENST00000408659 82 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AL022718.1-201ENST00000412004 84 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AL512326.2-201ENST00000426359 151 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AC069257.2-201ENST00000441819 155 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AL513328.1-201ENST00000446460 224 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AC011753.1-201ENST00000451001 220 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 RNA5SP57-201ENST00000459463 123 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AC107297.1-201ENST00000459991 176 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 SCARNA23-201ENST00000516060 130 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 RN7SKP12-201ENST00000516275 143 ntBASIC2.29□□□□□ -2.04
LIMS1P48059 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LIMS1P48059 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.29□□□□□ -2.04
LIMS1P48059 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.29□□□□□ -2.04
LIMS1P48059 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIMS1P48059 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIMS1P48059 MIR342-201ENST00000362212 99 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 RNY3P2-201ENST00000362918 102 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 U8.16-201ENST00000391279 133 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 Y_RNA.601-201ENST00000410500 113 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 AC096949.1-201ENST00000412047 152 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 AC104389.3-201ENST00000445629 235 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 SNORA31.11-201ENST00000516528 139 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 MIR4694-201ENST00000578534 80 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 Y_RNA.773-201ENST00000607168 90 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 MIR6895-201ENST00000613497 78 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 AC022202.1-201ENST00000613515 211 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 AL590808.1-201ENST00000618696 141 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 AC131280.1-202ENST00000624067 4211 ntBASIC2.28□□□□□ -2.04
LIMS1P48059 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
LIMS1P48059 MIR21-201ENST00000362134 72 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 RNU6-363P-201ENST00000362895 105 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 RNU6-1152P-201ENST00000384576 107 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 MIR450A2-201ENST00000385022 100 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 RNU6-1275P-201ENST00000391087 107 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 BX510359.4-201ENST00000423750 193 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 AC108938.1-201ENST00000451204 136 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 AP003327.1-201ENST00000529684 127 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.27□□□□□ -2.05
LIMS1P48059 MIR4658-201ENST00000584344 65 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 MIR1255B1-201ENST00000636325 63 ntBASIC2.27□□□□□ -2.05
LIMS1P48059 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
LIMS1P48059 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.26□□□□□ -2.05
LIMS1P48059 RNA5SP432-201ENST00000362480 116 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 SNORD115-2-201ENST00000362842 82 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 Y_RNA.299-201ENST00000364973 94 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 SNORD115-20-201ENST00000365099 82 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNU6-820P-201ENST00000384273 107 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNU1-148P-201ENST00000384472 162 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 Y_RNA.507-201ENST00000384500 99 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 MIR577-201ENST00000385196 96 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 AL034345.1-201ENST00000407768 123 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 MIR1267-201ENST00000408723 78 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.26□□□□□ -2.05
LIMS1P48059 AL353813.1-201ENST00000440700 253 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNU6-893P-201ENST00000458841 100 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNU2-11P-201ENST00000459191 187 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNA5SP168-201ENST00000516642 112 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 RNU7-181P-201ENST00000517234 74 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 AC026421.1-201ENST00000519101 163 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 MIR6841-201ENST00000637129 72 ntBASIC2.26□□□□□ -2.05
LIMS1P48059 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
LIMS1P48059 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIMS1P48059 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIMS1P48059 Y_RNA.10-201ENST00000362371 110 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 SNORD115-3-201ENST00000363100 82 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNA5SP173-201ENST00000364857 136 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 Y_RNA.360-201ENST00000365512 102 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 SNORA24-201ENST00000384096 131 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-950P-201ENST00000384651 107 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-1319P-201ENST00000390855 104 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-747P-201ENST00000390928 104 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-241P-201ENST00000391148 104 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 MIR1283-2-201ENST00000408621 87 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-177P-201ENST00000411257 104 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU2-13P-201ENST00000515909 113 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNA5SP137-201ENST00000516833 135 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 RNU6-1258P-201ENST00000516911 111 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 MIR5094-201ENST00000578766 85 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 AC067747.1-201ENST00000608026 250 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 AC016717.2-201ENST00000609089 5141 ntBASIC2.25□□□□□ -2.05
LIMS1P48059 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.24□□□□□ -2.05
LIMS1P48059 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
LIMS1P48059 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
LIMS1P48059 RNU6-832P-201ENST00000363319 107 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 RNU4-67P-201ENST00000364569 141 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms