Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORD115-43-201ENST00000365503 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-36-201ENST00000365629 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 Y_RNA.590-201ENST00000410140 107 ntBASIC0.79□□□□□ -2.28
CDX1P47902 RNU6-613P-201ENST00000410412 108 ntBASIC0.79□□□□□ -2.28
CDX1P47902 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.79□□□□□ -2.28
CDX1P47902 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.79□□□□□ -2.28
CDX1P47902 RNU6-504P-201ENST00000516568 104 ntBASIC0.79□□□□□ -2.28
CDX1P47902 RNU6-958P-201ENST00000516995 106 ntBASIC0.79□□□□□ -2.28
CDX1P47902 AC025627.3-201ENST00000582078 182 ntBASIC0.79□□□□□ -2.28
CDX1P47902 MIR4452-201ENST00000583004 71 ntBASIC0.79□□□□□ -2.28
CDX1P47902 AP000753.3-201ENST00000604083 169 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-40-201ENST00000606510 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 AL136317.1-201ENST00000612653 226 ntBASIC0.79□□□□□ -2.28
CDX1P47902 7SK.10-201ENST00000621414 298 ntBASIC0.79□□□□□ -2.28
CDX1P47902 MIR8062-201ENST00000621515 85 ntBASIC0.79□□□□□ -2.28
CDX1P47902 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.78□□□□□ -2.28
CDX1P47902 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.78□□□□□ -2.28
CDX1P47902 RNU1-93P-201ENST00000364704 169 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.461-201ENST00000384263 103 ntBASIC0.78□□□□□ -2.28
CDX1P47902 MIR606-201ENST00000384851 96 ntBASIC0.78□□□□□ -2.28
CDX1P47902 SNORA26-201ENST00000391286 122 ntBASIC0.78□□□□□ -2.28
CDX1P47902 snoU13.16-201ENST00000459350 104 ntBASIC0.78□□□□□ -2.28
CDX1P47902 PSMC1P5-201ENST00000512850 177 ntBASIC0.78□□□□□ -2.28
CDX1P47902 RNU6-1299P-201ENST00000516316 100 ntBASIC0.78□□□□□ -2.28
CDX1P47902 RNU6-113P-201ENST00000516653 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 RNU6-1270P-201ENST00000517128 108 ntBASIC0.78□□□□□ -2.28
CDX1P47902 AC007751.1-201ENST00000529260 376 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.812-201ENST00000610788 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 MIR6857-201ENST00000613267 93 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.784-201ENST00000613803 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 U2.14-201ENST00000615943 113 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.787-201ENST00000616522 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.780-201ENST00000617336 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 Y_RNA.801-201ENST00000619005 101 ntBASIC0.78□□□□□ -2.28
CDX1P47902 MIR335-201ENST00000362173 94 ntBASIC0.77□□□□□ -2.29
CDX1P47902 Y_RNA.176-201ENST00000363815 109 ntBASIC0.77□□□□□ -2.29
CDX1P47902 RNU4-38P-201ENST00000364472 129 ntBASIC0.77□□□□□ -2.29
CDX1P47902 SNORD24-201ENST00000383884 75 ntBASIC0.77□□□□□ -2.29
CDX1P47902 SNORD61-201ENST00000384252 73 ntBASIC0.77□□□□□ -2.29
CDX1P47902 Y_RNA.494-201ENST00000384432 111 ntBASIC0.77□□□□□ -2.29
CDX1P47902 Y_RNA.574-201ENST00000384766 95 ntBASIC0.77□□□□□ -2.29
CDX1P47902 SNORA40.5-201ENST00000391061 128 ntBASIC0.77□□□□□ -2.29
CDX1P47902 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.77□□□□□ -2.29
CDX1P47902 RNU2-70P-201ENST00000410718 179 ntBASIC0.77□□□□□ -2.29
CDX1P47902 AL035398.1-201ENST00000430869 322 ntBASIC0.77□□□□□ -2.29
CDX1P47902 RNU6-1110P-201ENST00000516462 101 ntBASIC0.77□□□□□ -2.29
CDX1P47902 AP003484.1-201ENST00000530974 250 ntBASIC0.77□□□□□ -2.29
CDX1P47902 AC008737.2-201ENST00000599446 118 ntBASIC0.77□□□□□ -2.29
CDX1P47902 AC134878.1-201ENST00000619901 243 ntBASIC0.77□□□□□ -2.29
CDX1P47902 MIR1-1-201ENST00000362147 71 ntBASIC0.76□□□□□ -2.29
CDX1P47902 MIR96-201ENST00000362288 78 ntBASIC0.76□□□□□ -2.29
CDX1P47902 Y_RNA.37-201ENST00000362606 108 ntBASIC0.76□□□□□ -2.29
CDX1P47902 Y_RNA.269-201ENST00000364685 89 ntBASIC0.76□□□□□ -2.29
CDX1P47902 SNORD114-22-201ENST00000365423 72 ntBASIC0.76□□□□□ -2.29
CDX1P47902 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
CDX1P47902 MT-TW-201ENST00000387382 68 ntBASIC0.76□□□□□ -2.29
CDX1P47902 RNU6-651P-201ENST00000411040 105 ntBASIC0.76□□□□□ -2.29
CDX1P47902 RNU2-55P-201ENST00000411146 174 ntBASIC0.76□□□□□ -2.29
CDX1P47902 Y_RNA.82-201ENST00000363000 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.92-201ENST00000363043 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.168-201ENST00000363740 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 SNORD114-27-201ENST00000363766 70 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.199-201ENST00000364014 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.235-201ENST00000364412 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.306-201ENST00000365015 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.312-201ENST00000365089 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.322-201ENST00000365151 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 RNU6-1335P-201ENST00000365426 107 ntBASIC0.75□□□□□ -2.29
CDX1P47902 SNORA27-201ENST00000384323 126 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.483-201ENST00000384380 101 ntBASIC0.75□□□□□ -2.29
CDX1P47902 RNU6-1011P-201ENST00000384668 107 ntBASIC0.75□□□□□ -2.29
CDX1P47902 MIR518F-201ENST00000384973 87 ntBASIC0.75□□□□□ -2.29
CDX1P47902 MIR532-201ENST00000385025 91 ntBASIC0.75□□□□□ -2.29
CDX1P47902 MIR605-201ENST00000385078 83 ntBASIC0.75□□□□□ -2.29
CDX1P47902 MT-TT-201ENST00000387460 66 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.622-201ENST00000411091 108 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.650-201ENST00000459002 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 AC113410.1-201ENST00000505029 247 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.777-201ENST00000516982 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.771-201ENST00000598668 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
CDX1P47902 Y_RNA.789-201ENST00000622480 102 ntBASIC0.75□□□□□ -2.29
CDX1P47902 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.74□□□□□ -2.29
CDX1P47902 AC023934.1-201ENST00000574529 2389 ntBASIC0.74□□□□□ -2.29
CDX1P47902 Y_RNA.145-201ENST00000363527 102 ntBASIC0.74□□□□□ -2.29
CDX1P47902 Y_RNA.432-201ENST00000384087 111 ntBASIC0.74□□□□□ -2.29
CDX1P47902 RNY3P5-201ENST00000384127 102 ntBASIC0.74□□□□□ -2.29
CDX1P47902 MIR100-201ENST00000385259 80 ntBASIC0.74□□□□□ -2.29
CDX1P47902 MT-TN-201ENST00000387400 73 ntBASIC0.74□□□□□ -2.29
CDX1P47902 RNU6-205P-201ENST00000390858 107 ntBASIC0.74□□□□□ -2.29
CDX1P47902 SNORD99-201ENST00000408612 74 ntBASIC0.74□□□□□ -2.29
CDX1P47902 SNORD2.1-201ENST00000458762 69 ntBASIC0.74□□□□□ -2.29
CDX1P47902 SNORA18.4-201ENST00000516440 124 ntBASIC0.74□□□□□ -2.29
CDX1P47902 AP000942.4-201ENST00000604811 241 ntBASIC0.74□□□□□ -2.29
CDX1P47902 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
CDX1P47902 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
CDX1P47902 Y_RNA.54-201ENST00000362766 105 ntBASIC0.73□□□□□ -2.29
CDX1P47902 RNU6-888P-201ENST00000363010 101 ntBASIC0.73□□□□□ -2.29
CDX1P47902 Y_RNA.116-201ENST00000363292 103 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 265.3 ms