Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.49□□□□□ -2.33
BDNFP23560 MIR4804-201ENST00000581683 73 ntBASIC0.49□□□□□ -2.33
BDNFP23560 AP000942.4-201ENST00000604811 241 ntBASIC0.49□□□□□ -2.33
BDNFP23560 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
BDNFP23560 Y_RNA.58-201ENST00000362807 102 ntBASIC0.48□□□□□ -2.33
BDNFP23560 Y_RNA.154-201ENST00000363624 102 ntBASIC0.48□□□□□ -2.33
BDNFP23560 RNY3P1-201ENST00000365085 102 ntBASIC0.48□□□□□ -2.33
BDNFP23560 RNY1P4-201ENST00000384595 115 ntBASIC0.48□□□□□ -2.33
BDNFP23560 SNORD115-46-201ENST00000390982 71 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MIR938-201ENST00000401216 83 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MTCO1P5-201ENST00000433573 344 ntBASIC0.48□□□□□ -2.33
BDNFP23560 AC010655.3-201ENST00000478818 450 ntBASIC0.48□□□□□ -2.33
BDNFP23560 SNORA18.4-201ENST00000516440 124 ntBASIC0.48□□□□□ -2.33
BDNFP23560 RNU6-1046P-201ENST00000516538 107 ntBASIC0.48□□□□□ -2.33
BDNFP23560 RNU6-958P-201ENST00000516995 106 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MIR5692C2-201ENST00000577959 77 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MIR3612-201ENST00000579753 87 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MIR4676-201ENST00000583078 72 ntBASIC0.48□□□□□ -2.33
BDNFP23560 AL021707.8-201ENST00000609428 183 ntBASIC0.48□□□□□ -2.33
BDNFP23560 MIR18A-201ENST00000362310 71 ntBASIC0.47□□□□□ -2.33
BDNFP23560 SNORA25.1-201ENST00000362326 128 ntBASIC0.47□□□□□ -2.33
BDNFP23560 RNU6-369P-201ENST00000362515 102 ntBASIC0.47□□□□□ -2.33
BDNFP23560 SNORA26-201ENST00000391286 122 ntBASIC0.47□□□□□ -2.33
BDNFP23560 RNU6-101P-201ENST00000410323 104 ntBASIC0.47□□□□□ -2.33
BDNFP23560 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.47□□□□□ -2.33
BDNFP23560 Y_RNA.715-201ENST00000517082 110 ntBASIC0.47□□□□□ -2.33
BDNFP23560 AL049861.1-201ENST00000603130 150 ntBASIC0.47□□□□□ -2.33
BDNFP23560 AL162730.1-201ENST00000605734 292 ntBASIC0.47□□□□□ -2.33
BDNFP23560 AL133255.1-201ENST00000606374 441 ntBASIC0.47□□□□□ -2.33
BDNFP23560 AC007485.1-201ENST00000616755 206 ntBASIC0.47□□□□□ -2.33
BDNFP23560 uc_338.16-201ENST00000621804 95 ntBASIC0.47□□□□□ -2.33
BDNFP23560 MIR5087-201ENST00000635826 76 ntBASIC0.47□□□□□ -2.33
BDNFP23560 Y_RNA.293-201ENST00000364908 93 ntBASIC0.46□□□□□ -2.34
BDNFP23560 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
BDNFP23560 HSPE1P25-201ENST00000455484 251 ntBASIC0.46□□□□□ -2.34
BDNFP23560 MRPS35P2-201ENST00000508242 191 ntBASIC0.46□□□□□ -2.34
BDNFP23560 SNORD77.4-201ENST00000516158 81 ntBASIC0.46□□□□□ -2.34
BDNFP23560 AC092634.7-201ENST00000621022 103 ntBASIC0.46□□□□□ -2.34
BDNFP23560 SNORD114-23-201ENST00000363536 72 ntBASIC0.45□□□□□ -2.34
BDNFP23560 Y_RNA.395-201ENST00000383945 109 ntBASIC0.45□□□□□ -2.34
BDNFP23560 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
BDNFP23560 SNORD71-201ENST00000411292 86 ntBASIC0.45□□□□□ -2.34
BDNFP23560 Y_RNA.666-201ENST00000516187 112 ntBASIC0.45□□□□□ -2.34
BDNFP23560 SNORA40.15-201ENST00000516884 107 ntBASIC0.45□□□□□ -2.34
BDNFP23560 RNU2-31P-201ENST00000516954 155 ntBASIC0.45□□□□□ -2.34
BDNFP23560 LARP7P1-201ENST00000605576 316 ntBASIC0.45□□□□□ -2.34
BDNFP23560 uc_338.22-201ENST00000622722 187 ntBASIC0.45□□□□□ -2.34
BDNFP23560 RNU4-73P-201ENST00000363164 141 ntBASIC0.44□□□□□ -2.34
BDNFP23560 Y_RNA.205-201ENST00000364128 113 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-290P-201ENST00000365212 101 ntBASIC0.44□□□□□ -2.34
BDNFP23560 SNORD24-201ENST00000383884 75 ntBASIC0.44□□□□□ -2.34
BDNFP23560 MIR193B-201ENST00000384907 83 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1319P-201ENST00000390855 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-747P-201ENST00000390928 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 Y_RNA.581-201ENST00000391017 97 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-241P-201ENST00000391148 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-447P-201ENST00000410293 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1118P-201ENST00000410382 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1076P-201ENST00000410397 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-355P-201ENST00000410427 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-791P-201ENST00000410467 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-705P-201ENST00000410601 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1100P-201ENST00000410691 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-860P-201ENST00000410860 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1217P-201ENST00000411276 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-785P-201ENST00000411324 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-507P-201ENST00000516045 100 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-365P-201ENST00000517113 106 ntBASIC0.44□□□□□ -2.34
BDNFP23560 MIR4795-201ENST00000584182 89 ntBASIC0.44□□□□□ -2.34
BDNFP23560 U6.90-201ENST00000614007 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 U6.70-201ENST00000620287 104 ntBASIC0.44□□□□□ -2.34
BDNFP23560 AC010487.4-201ENST00000637027 61 ntBASIC0.44□□□□□ -2.34
BDNFP23560 AL589743.1-201ENST00000551932 2712 ntBASIC0.44□□□□□ -2.34
BDNFP23560 RNU6-1272P-201ENST00000362776 107 ntBASIC0.43□□□□□ -2.34
BDNFP23560 Y_RNA.813-201ENST00000364639 102 ntBASIC0.43□□□□□ -2.34
BDNFP23560 SNORA1.1-201ENST00000364671 133 ntBASIC0.43□□□□□ -2.34
BDNFP23560 RNU6-326P-201ENST00000365480 107 ntBASIC0.43□□□□□ -2.34
BDNFP23560 SNORA27-201ENST00000384323 126 ntBASIC0.43□□□□□ -2.34
BDNFP23560 RNU6-364P-201ENST00000384387 107 ntBASIC0.43□□□□□ -2.34
BDNFP23560 MIR526A2-201ENST00000390198 65 ntBASIC0.43□□□□□ -2.34
BDNFP23560 MIR1252-201ENST00000408861 65 ntBASIC0.43□□□□□ -2.34
BDNFP23560 RNU6-383P-201ENST00000410864 94 ntBASIC0.43□□□□□ -2.34
BDNFP23560 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.43□□□□□ -2.34
BDNFP23560 AC244023.1-201ENST00000426884 112 ntBASIC0.43□□□□□ -2.34
BDNFP23560 MTND4P19-201ENST00000446659 478 ntBASIC0.43□□□□□ -2.34
BDNFP23560 snoU13.21-201ENST00000459368 105 ntBASIC0.43□□□□□ -2.34
BDNFP23560 RPS29P24-201ENST00000486345 171 ntBASIC0.43□□□□□ -2.34
BDNFP23560 RNU6-397P-201ENST00000516226 104 ntBASIC0.43□□□□□ -2.34
BDNFP23560 MIR4801-201ENST00000582704 82 ntBASIC0.43□□□□□ -2.34
BDNFP23560 AC242498.1-201ENST00000604134 111 ntBASIC0.43□□□□□ -2.34
BDNFP23560 AC243829.6-201ENST00000612652 106 ntBASIC0.43□□□□□ -2.34
BDNFP23560 Z97988.1-201ENST00000637697 135 ntBASIC0.43□□□□□ -2.34
BDNFP23560 Y_RNA.380-201ENST00000365663 111 ntBASIC0.42□□□□□ -2.34
BDNFP23560 MIR1257-201ENST00000408490 117 ntBASIC0.42□□□□□ -2.34
BDNFP23560 RNU7-56P-201ENST00000458744 62 ntBASIC0.42□□□□□ -2.34
BDNFP23560 Y_RNA.639-201ENST00000458981 102 ntBASIC0.42□□□□□ -2.34
BDNFP23560 RNU6-693P-201ENST00000516134 107 ntBASIC0.42□□□□□ -2.34
BDNFP23560 RNA5SP134-201ENST00000516492 96 ntBASIC0.42□□□□□ -2.34
BDNFP23560 RNU6-897P-201ENST00000517135 105 ntBASIC0.42□□□□□ -2.34
BDNFP23560 RNU6-504P-201ENST00000516568 104 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms