Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR3678-201ENST00000578455 94 ntBASIC0.04□□□□□ -2.4
USF1P22415 RPS29P30-201ENST00000600975 111 ntBASIC0.04□□□□□ -2.4
USF1P22415 AP000942.4-201ENST00000604811 241 ntBASIC0.04□□□□□ -2.4
USF1P22415 Y_RNA.383-201ENST00000383855 97 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU6-144P-201ENST00000383951 107 ntBASIC0.03□□□□□ -2.4
USF1P22415 MIR588-201ENST00000384900 83 ntBASIC0.03□□□□□ -2.4
USF1P22415 MT-TL1-201ENST00000386347 75 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU6-876P-201ENST00000391295 104 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU6-1165P-201ENST00000410119 107 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU4-30P-201ENST00000410245 143 ntBASIC0.03□□□□□ -2.4
USF1P22415 POLR2KP2-201ENST00000438155 177 ntBASIC0.03□□□□□ -2.4
USF1P22415 Y_RNA.655-201ENST00000515919 96 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU6-1170P-201ENST00000515974 106 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNA5SP395-201ENST00000516567 118 ntBASIC0.03□□□□□ -2.4
USF1P22415 MIR4305-201ENST00000583252 102 ntBASIC0.03□□□□□ -2.4
USF1P22415 AC093783.1-201ENST00000612976 329 ntBASIC0.03□□□□□ -2.4
USF1P22415 AL138825.1-201ENST00000618587 192 ntBASIC0.03□□□□□ -2.4
USF1P22415 RNU4-80P-201ENST00000363200 141 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU6-1099P-201ENST00000363533 107 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU6-899P-201ENST00000363947 107 ntBASIC0.02□□□□□ -2.41
USF1P22415 Y_RNA.259-201ENST00000364619 101 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNY3-201ENST00000365484 102 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU6-815P-201ENST00000384080 113 ntBASIC0.02□□□□□ -2.41
USF1P22415 Y_RNA.439-201ENST00000384119 94 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU6-937P-201ENST00000384325 106 ntBASIC0.02□□□□□ -2.41
USF1P22415 SNORA40.5-201ENST00000391061 128 ntBASIC0.02□□□□□ -2.41
USF1P22415 SNORA26.5-201ENST00000391215 123 ntBASIC0.02□□□□□ -2.41
USF1P22415 MTCO1P5-201ENST00000433573 344 ntBASIC0.02□□□□□ -2.41
USF1P22415 snoU13.2-201ENST00000459201 104 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU7-53P-201ENST00000516705 60 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU7-149P-201ENST00000516739 59 ntBASIC0.02□□□□□ -2.41
USF1P22415 RNU6-448P-201ENST00000517052 107 ntBASIC0.02□□□□□ -2.41
USF1P22415 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.02□□□□□ -2.41
USF1P22415 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.01□□□□□ -2.41
USF1P22415 SNORD115-28-201ENST00000363931 81 ntBASIC0.01□□□□□ -2.41
USF1P22415 Y_RNA.567-201ENST00000384736 106 ntBASIC0.01□□□□□ -2.41
USF1P22415 RNU6-913P-201ENST00000390913 95 ntBASIC0.01□□□□□ -2.41
USF1P22415 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.01□□□□□ -2.41
USF1P22415 SEPT14P8-201ENST00000508026 178 ntBASIC0.01□□□□□ -2.41
USF1P22415 AC112693.2-201ENST00000556538 232 ntBASIC0.01□□□□□ -2.41
USF1P22415 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.01□□□□□ -2.41
USF1P22415 SNORA42.1-201ENST00000363515 137 ntBASIC0□□□□□ -2.41
USF1P22415 RNU4-40P-201ENST00000364351 143 ntBASIC0□□□□□ -2.41
USF1P22415 RNU6-1138P-201ENST00000365359 106 ntBASIC0□□□□□ -2.41
USF1P22415 Y_RNA.387-201ENST00000383918 102 ntBASIC0□□□□□ -2.41
USF1P22415 Y_RNA.463-201ENST00000384271 102 ntBASIC0□□□□□ -2.41
USF1P22415 MT-TF-201ENST00000387314 71 ntBASIC0□□□□□ -2.41
USF1P22415 RNA5SP496-201ENST00000391240 109 ntBASIC0□□□□□ -2.41
USF1P22415 U8.20-201ENST00000459445 131 ntBASIC0□□□□□ -2.41
USF1P22415 Y_RNA.666-201ENST00000516187 112 ntBASIC0□□□□□ -2.41
USF1P22415 SNORA40.14-201ENST00000516543 86 ntBASIC0□□□□□ -2.41
USF1P22415 SNORD113-5-201ENST00000607261 78 ntBASIC0□□□□□ -2.41
USF1P22415 AC092794.1-201ENST00000612734 582 ntBASIC0□□□□□ -2.41
USF1P22415 MTND4LP32-201ENST00000636111 270 ntBASIC0□□□□□ -2.41
USF1P22415 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.01□□□□□ -2.41
USF1P22415 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
USF1P22415 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.01□□□□□ -2.41
USF1P22415 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.01□□□□□ -2.41
USF1P22415 SNORA1.1-201ENST00000364671 133 ntBASIC-0.01□□□□□ -2.41
USF1P22415 MIR563-201ENST00000385080 79 ntBASIC-0.01□□□□□ -2.41
USF1P22415 RNU6-308P-201ENST00000390957 107 ntBASIC-0.01□□□□□ -2.41
USF1P22415 RNY4P36-201ENST00000391116 96 ntBASIC-0.01□□□□□ -2.41
USF1P22415 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.01□□□□□ -2.41
USF1P22415 RNU2-59P-201ENST00000410482 191 ntBASIC-0.01□□□□□ -2.41
USF1P22415 AC010655.3-201ENST00000478818 450 ntBASIC-0.01□□□□□ -2.41
USF1P22415 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.01□□□□□ -2.41
USF1P22415 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-0.01□□□□□ -2.41
USF1P22415 AC099654.14-201ENST00000638599 341 ntBASIC-0.01□□□□□ -2.41
USF1P22415 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.02□□□□□ -2.41
USF1P22415 SNORA72.1-201ENST00000363485 129 ntBASIC-0.02□□□□□ -2.41
USF1P22415 SNORA27-201ENST00000384323 126 ntBASIC-0.02□□□□□ -2.41
USF1P22415 SNORD116-29-201ENST00000384516 83 ntBASIC-0.02□□□□□ -2.41
USF1P22415 RNU6-35P-201ENST00000384530 107 ntBASIC-0.02□□□□□ -2.41
USF1P22415 Y_RNA.526-201ENST00000384572 110 ntBASIC-0.02□□□□□ -2.41
USF1P22415 RNU6-602P-201ENST00000411155 105 ntBASIC-0.02□□□□□ -2.41
USF1P22415 AL160004.2-201ENST00000432935 350 ntBASIC-0.02□□□□□ -2.41
USF1P22415 RPS29P24-201ENST00000486345 171 ntBASIC-0.02□□□□□ -2.41
USF1P22415 RNU6-191P-201ENST00000516295 94 ntBASIC-0.02□□□□□ -2.41
USF1P22415 AC007751.1-201ENST00000529260 376 ntBASIC-0.02□□□□□ -2.41
USF1P22415 AC133485.4-201ENST00000561835 220 ntBASIC-0.02□□□□□ -2.41
USF1P22415 MIR4662B-201ENST00000579498 81 ntBASIC-0.02□□□□□ -2.41
USF1P22415 AC092447.9-201ENST00000603395 144 ntBASIC-0.02□□□□□ -2.41
USF1P22415 AL021707.8-201ENST00000609428 183 ntBASIC-0.02□□□□□ -2.41
USF1P22415 MIR6759-201ENST00000638110 65 ntBASIC-0.02□□□□□ -2.41
USF1P22415 Y_RNA.37-201ENST00000362606 108 ntBASIC-0.03□□□□□ -2.41
USF1P22415 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.03□□□□□ -2.41
USF1P22415 SNORD114-9-201ENST00000364370 72 ntBASIC-0.03□□□□□ -2.41
USF1P22415 MTND1P14-201ENST00000427400 950 ntBASIC-0.03□□□□□ -2.41
USF1P22415 Y_RNA.718-201ENST00000517110 102 ntBASIC-0.03□□□□□ -2.41
USF1P22415 MIR4667-201ENST00000578933 66 ntBASIC-0.03□□□□□ -2.41
USF1P22415 AL049861.1-201ENST00000603130 150 ntBASIC-0.03□□□□□ -2.41
USF1P22415 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.03□□□□□ -2.41
USF1P22415 MIR411-201ENST00000362239 96 ntBASIC-0.04□□□□□ -2.42
USF1P22415 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.04□□□□□ -2.42
USF1P22415 SNORA36.1-201ENST00000363424 132 ntBASIC-0.04□□□□□ -2.42
USF1P22415 RNU1-115P-201ENST00000365329 160 ntBASIC-0.04□□□□□ -2.42
USF1P22415 Y_RNA.384-201ENST00000383909 102 ntBASIC-0.04□□□□□ -2.42
USF1P22415 Y_RNA.587-201ENST00000391210 103 ntBASIC-0.04□□□□□ -2.42
USF1P22415 RNU6-938P-201ENST00000411285 103 ntBASIC-0.04□□□□□ -2.42
USF1P22415 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms