Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU1-93P-201ENST00000364704 169 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 RNU6-945P-201ENST00000383947 107 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 Y_RNA.535-201ENST00000384612 99 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 Y_RNA.641-201ENST00000459414 105 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 RNU6-1270P-201ENST00000517128 108 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 MIR3171-201ENST00000584270 74 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 RMST_2.1-201ENST00000617263 136 ntBASIC0.9□□□□□ -2.27
HMGB1P09429 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.89□□□□□ -2.27
HMGB1P09429 Y_RNA.24-201ENST00000362508 103 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 Y_RNA.61-201ENST00000362835 102 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 MIR526A2-201ENST00000390198 65 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 RNU6-365P-201ENST00000517113 106 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 AP003484.1-201ENST00000530974 250 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB1P09429 AP000942.4-201ENST00000604811 241 ntBASIC0.89□□□□□ -2.27
HMGB1P09429 Y_RNA.276-201ENST00000364732 109 ntBASIC0.88□□□□□ -2.27
HMGB1P09429 SNORA24-201ENST00000384096 131 ntBASIC0.88□□□□□ -2.27
HMGB1P09429 SNORA40.5-201ENST00000391061 128 ntBASIC0.88□□□□□ -2.27
HMGB1P09429 Y_RNA.638-201ENST00000459374 113 ntBASIC0.88□□□□□ -2.27
HMGB1P09429 SNORA18.4-201ENST00000516440 124 ntBASIC0.88□□□□□ -2.27
HMGB1P09429 RNU6-369P-201ENST00000362515 102 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 Y_RNA.37-201ENST00000362606 108 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 SNORA27-201ENST00000384323 126 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 SNORD38B-201ENST00000384690 67 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 AC244023.1-201ENST00000426884 112 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 AL731563.1-201ENST00000442202 214 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 MTND5P22-201ENST00000458380 195 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 AC018659.1-201ENST00000551083 169 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 MIR4680-201ENST00000580906 66 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 AC242498.1-201ENST00000604134 111 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 SNORD38B-202ENST00000625943 69 ntBASIC0.87□□□□□ -2.27
HMGB1P09429 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.87□□□□□ -2.27
HMGB1P09429 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.86□□□□□ -2.27
HMGB1P09429 RNY1P8-201ENST00000383970 114 ntBASIC0.86□□□□□ -2.27
HMGB1P09429 SNORA8.3-201ENST00000384679 139 ntBASIC0.86□□□□□ -2.27
HMGB1P09429 RNU6-733P-201ENST00000410759 104 ntBASIC0.86□□□□□ -2.27
HMGB1P09429 RNU7-53P-201ENST00000516705 60 ntBASIC0.86□□□□□ -2.27
HMGB1P09429 Y_RNA.84-201ENST00000363011 104 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 SNORD61-201ENST00000384252 73 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 Y_RNA.572-201ENST00000384757 98 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 MIR573-201ENST00000384964 99 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 MIR518F-201ENST00000384973 87 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 MIR1276-201ENST00000408707 83 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 AC113618.1-201ENST00000416747 285 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 SERF1AP1-201ENST00000514575 187 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 RNU6-126P-201ENST00000516685 103 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.85□□□□□ -2.27
HMGB1P09429 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
HMGB1P09429 RNU6-211P-201ENST00000384047 107 ntBASIC0.84□□□□□ -2.27
HMGB1P09429 RNU6-913P-201ENST00000390913 95 ntBASIC0.84□□□□□ -2.27
HMGB1P09429 SNORD36C-201ENST00000516733 66 ntBASIC0.84□□□□□ -2.27
HMGB1P09429 RNU6-1289P-201ENST00000384431 106 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 RNU6-1237P-201ENST00000384777 107 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 RNU6-938P-201ENST00000411285 103 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 RNU7-73P-201ENST00000458743 63 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 RPS29P24-201ENST00000486345 171 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 RNU6-570P-201ENST00000517051 105 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 MIR4676-201ENST00000583078 72 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.83□□□□□ -2.28
HMGB1P09429 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HMGB1P09429 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
HMGB1P09429 Y_RNA.202-201ENST00000364083 110 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 Y_RNA.229-201ENST00000364347 113 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 SNORD24-201ENST00000383884 75 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 MIR520E-201ENST00000384867 87 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 HMGN1P33-201ENST00000432945 451 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 AL138752.1-201ENST00000452964 351 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 RNU6-1338P-201ENST00000516328 91 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 RNU6-504P-201ENST00000516568 104 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 MIR6835-201ENST00000621552 64 ntBASIC0.82□□□□□ -2.28
HMGB1P09429 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.82□□□□□ -2.28
HMGB1P09429 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
HMGB1P09429 RNU6-1309P-201ENST00000363305 108 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 SNORA63C-201ENST00000364578 129 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.81□□□□□ -2.28
HMGB1P09429 DEFB108E-201ENST00000524692 240 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 AC020661.2-201ENST00000560114 134 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 AC004817.2-201ENST00000561794 651 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 MIR5688-201ENST00000580619 83 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 MIR4804-201ENST00000581683 73 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 AC010332.2-201ENST00000613083 1904 ntBASIC0.81□□□□□ -2.28
HMGB1P09429 UBE2WP1-201ENST00000362030 340 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 Y_RNA.7-201ENST00000362352 102 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 Y_RNA.153-201ENST00000363615 91 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 SNORA1.1-201ENST00000364671 133 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 MIR140-201ENST00000385282 100 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 RNU2-70P-201ENST00000410718 179 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 MTND5P15-201ENST00000434246 349 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 AC020891.4-201ENST00000605745 93 ntBASIC0.8□□□□□ -2.28
HMGB1P09429 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
HMGB1P09429 MIR342-201ENST00000362212 99 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 Y_RNA.117-201ENST00000363294 101 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 MIR548A2-201ENST00000384956 97 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 RNU6-1299P-201ENST00000516316 100 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 AL162730.1-201ENST00000605734 292 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 MIR6504-201ENST00000613520 61 ntBASIC0.79□□□□□ -2.28
HMGB1P09429 SNORA26-201ENST00000391286 122 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 RNU6-177P-201ENST00000411257 104 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms