Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNA5SP496-201ENST00000391240 109 ntBASIC0.75□□□□□ -2.29
SIX3O95343 MIR548O-201ENST00000408583 114 ntBASIC0.75□□□□□ -2.29
SIX3O95343 RNA5SP25-201ENST00000410815 110 ntBASIC0.75□□□□□ -2.29
SIX3O95343 MTCO2P12-201ENST00000427426 682 ntBASIC0.75□□□□□ -2.29
SIX3O95343 AL035398.1-201ENST00000430869 322 ntBASIC0.75□□□□□ -2.29
SIX3O95343 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.75□□□□□ -2.29
SIX3O95343 RNU7-67P-201ENST00000459003 62 ntBASIC0.75□□□□□ -2.29
SIX3O95343 AC131281.1-201ENST00000522984 164 ntBASIC0.75□□□□□ -2.29
SIX3O95343 MIR5692C2-201ENST00000577959 77 ntBASIC0.75□□□□□ -2.29
SIX3O95343 uc_338.4-201ENST00000616635 176 ntBASIC0.75□□□□□ -2.29
SIX3O95343 MIR6759-201ENST00000638110 65 ntBASIC0.75□□□□□ -2.29
SIX3O95343 RNU6-770P-201ENST00000363929 105 ntBASIC0.74□□□□□ -2.29
SIX3O95343 Y_RNA.210-201ENST00000364161 110 ntBASIC0.74□□□□□ -2.29
SIX3O95343 Y_RNA.241-201ENST00000364470 117 ntBASIC0.74□□□□□ -2.29
SIX3O95343 RNU6-1335P-201ENST00000365426 107 ntBASIC0.74□□□□□ -2.29
SIX3O95343 Y_RNA.455-201ENST00000384230 98 ntBASIC0.74□□□□□ -2.29
SIX3O95343 MIR1912-201ENST00000410389 80 ntBASIC0.74□□□□□ -2.29
SIX3O95343 AC004941.2-201ENST00000427009 228 ntBASIC0.74□□□□□ -2.29
SIX3O95343 AL392103.1-201ENST00000447000 198 ntBASIC0.74□□□□□ -2.29
SIX3O95343 AC113410.1-201ENST00000505029 247 ntBASIC0.74□□□□□ -2.29
SIX3O95343 RNU6-1143P-201ENST00000516125 104 ntBASIC0.74□□□□□ -2.29
SIX3O95343 RNU7-25P-201ENST00000516544 62 ntBASIC0.74□□□□□ -2.29
SIX3O95343 AC006006.1-201ENST00000603082 144 ntBASIC0.74□□□□□ -2.29
SIX3O95343 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.74□□□□□ -2.29
SIX3O95343 MTND1P7-201ENST00000632801 297 ntBASIC0.74□□□□□ -2.29
SIX3O95343 AC134503.1-201ENST00000633048 54 ntBASIC0.74□□□□□ -2.29
SIX3O95343 Y_RNA.376-201ENST00000365638 108 ntBASIC0.73□□□□□ -2.29
SIX3O95343 SNORA22B-201ENST00000383876 138 ntBASIC0.73□□□□□ -2.29
SIX3O95343 RNU6-662P-201ENST00000384253 104 ntBASIC0.73□□□□□ -2.29
SIX3O95343 Y_RNA.527-201ENST00000384573 102 ntBASIC0.73□□□□□ -2.29
SIX3O95343 MIR548P-201ENST00000408336 84 ntBASIC0.73□□□□□ -2.29
SIX3O95343 RNU6-613P-201ENST00000410412 108 ntBASIC0.73□□□□□ -2.29
SIX3O95343 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.73□□□□□ -2.29
SIX3O95343 AC133485.1-201ENST00000567176 124 ntBASIC0.73□□□□□ -2.29
SIX3O95343 AC138907.6-201ENST00000568401 126 ntBASIC0.73□□□□□ -2.29
SIX3O95343 MIR548AO-201ENST00000579992 96 ntBASIC0.73□□□□□ -2.29
SIX3O95343 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
SIX3O95343 MTND4P29-201ENST00000503122 1372 ntBASIC0.72□□□□□ -2.29
SIX3O95343 RNU6-1272P-201ENST00000362776 107 ntBASIC0.72□□□□□ -2.29
SIX3O95343 RNU6-326P-201ENST00000365480 107 ntBASIC0.72□□□□□ -2.29
SIX3O95343 RNU6-110P-201ENST00000384508 104 ntBASIC0.72□□□□□ -2.29
SIX3O95343 AC091959.1-201ENST00000495857 238 ntBASIC0.72□□□□□ -2.29
SIX3O95343 AL355297.3-201ENST00000604082 446 ntBASIC0.72□□□□□ -2.29
SIX3O95343 MIR6866-201ENST00000638146 69 ntBASIC0.72□□□□□ -2.29
SIX3O95343 Y_RNA.105-201ENST00000363182 111 ntBASIC0.71□□□□□ -2.3
SIX3O95343 Y_RNA.488-201ENST00000384403 102 ntBASIC0.71□□□□□ -2.3
SIX3O95343 Y_RNA.547-201ENST00000384654 119 ntBASIC0.71□□□□□ -2.3
SIX3O95343 MIR1302-7-201ENST00000408841 72 ntBASIC0.71□□□□□ -2.3
SIX3O95343 AC113618.1-201ENST00000416747 285 ntBASIC0.71□□□□□ -2.3
SIX3O95343 Z95118.1-201ENST00000421372 247 ntBASIC0.71□□□□□ -2.3
SIX3O95343 Y_RNA.637-201ENST00000459424 114 ntBASIC0.71□□□□□ -2.3
SIX3O95343 RNU4-57P-201ENST00000515980 135 ntBASIC0.71□□□□□ -2.3
SIX3O95343 AC011195.1-201ENST00000578177 177 ntBASIC0.71□□□□□ -2.3
SIX3O95343 MIR5589-201ENST00000579442 60 ntBASIC0.71□□□□□ -2.3
SIX3O95343 MIR4662B-201ENST00000579498 81 ntBASIC0.71□□□□□ -2.3
SIX3O95343 AC022140.2-201ENST00000623500 188 ntBASIC0.71□□□□□ -2.3
SIX3O95343 Y_RNA.158-201ENST00000363651 101 ntBASIC0.7□□□□□ -2.3
SIX3O95343 Y_RNA.170-201ENST00000363746 110 ntBASIC0.7□□□□□ -2.3
SIX3O95343 Y_RNA.541-201ENST00000384640 113 ntBASIC0.7□□□□□ -2.3
SIX3O95343 RNU6-205P-201ENST00000390858 107 ntBASIC0.7□□□□□ -2.3
SIX3O95343 Y_RNA.587-201ENST00000391210 103 ntBASIC0.7□□□□□ -2.3
SIX3O95343 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
SIX3O95343 RNA5SP222-201ENST00000411039 105 ntBASIC0.7□□□□□ -2.3
SIX3O95343 TRBVB-201ENST00000477100 408 ntBASIC0.7□□□□□ -2.3
SIX3O95343 Y_RNA.666-201ENST00000516187 112 ntBASIC0.7□□□□□ -2.3
SIX3O95343 DEFB108E-201ENST00000524692 240 ntBASIC0.7□□□□□ -2.3
SIX3O95343 Y_RNA.802-201ENST00000614892 130 ntBASIC0.7□□□□□ -2.3
SIX3O95343 AC134878.1-201ENST00000619901 243 ntBASIC0.7□□□□□ -2.3
SIX3O95343 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.69□□□□□ -2.3
SIX3O95343 Y_RNA.61-201ENST00000362835 102 ntBASIC0.69□□□□□ -2.3
SIX3O95343 Y_RNA.168-201ENST00000363740 102 ntBASIC0.69□□□□□ -2.3
SIX3O95343 MIR215-201ENST00000384858 110 ntBASIC0.69□□□□□ -2.3
SIX3O95343 MIR329-2-201ENST00000385029 84 ntBASIC0.69□□□□□ -2.3
SIX3O95343 SNORD105-201ENST00000386910 85 ntBASIC0.69□□□□□ -2.3
SIX3O95343 RNU6-121P-201ENST00000410525 99 ntBASIC0.69□□□□□ -2.3
SIX3O95343 AC006461.1-201ENST00000412637 326 ntBASIC0.69□□□□□ -2.3
SIX3O95343 ELOCP20-201ENST00000422460 345 ntBASIC0.69□□□□□ -2.3
SIX3O95343 RNU6-958P-201ENST00000516995 106 ntBASIC0.69□□□□□ -2.3
SIX3O95343 AP003733.2-201ENST00000529409 171 ntBASIC0.69□□□□□ -2.3
SIX3O95343 Z83818.1-201ENST00000603584 150 ntBASIC0.69□□□□□ -2.3
SIX3O95343 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
SIX3O95343 MIR409-201ENST00000362237 79 ntBASIC0.68□□□□□ -2.3
SIX3O95343 SNORA9.1-201ENST00000362412 131 ntBASIC0.68□□□□□ -2.3
SIX3O95343 SNORD115-28-201ENST00000363931 81 ntBASIC0.68□□□□□ -2.3
SIX3O95343 Y_RNA.214-201ENST00000364201 112 ntBASIC0.68□□□□□ -2.3
SIX3O95343 SNORD114-15-201ENST00000364687 72 ntBASIC0.68□□□□□ -2.3
SIX3O95343 SNORA36.2-201ENST00000384004 127 ntBASIC0.68□□□□□ -2.3
SIX3O95343 Y_RNA.535-201ENST00000384612 99 ntBASIC0.68□□□□□ -2.3
SIX3O95343 MIR1827-201ENST00000408549 66 ntBASIC0.68□□□□□ -2.3
SIX3O95343 RPL21P38-201ENST00000418090 167 ntBASIC0.68□□□□□ -2.3
SIX3O95343 snoU13.16-201ENST00000459350 104 ntBASIC0.68□□□□□ -2.3
SIX3O95343 SCARNA24.2-201ENST00000516968 130 ntBASIC0.68□□□□□ -2.3
SIX3O95343 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.68□□□□□ -2.3
SIX3O95343 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
SIX3O95343 RNA5SP347-201ENST00000362445 119 ntBASIC0.67□□□□□ -2.3
SIX3O95343 Y_RNA.202-201ENST00000364083 110 ntBASIC0.67□□□□□ -2.3
SIX3O95343 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
SIX3O95343 RNU1-119P-201ENST00000391122 165 ntBASIC0.67□□□□□ -2.3
SIX3O95343 RNA5SP63-201ENST00000391225 112 ntBASIC0.67□□□□□ -2.3
SIX3O95343 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms