Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.604-201ENST00000410574 102 ntBASIC0.65□□□□□ -2.31
SDC3O75056 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.65□□□□□ -2.31
SDC3O75056 AL731563.1-201ENST00000442202 214 ntBASIC0.65□□□□□ -2.31
SDC3O75056 MTCO2P24-201ENST00000515611 426 ntBASIC0.65□□□□□ -2.31
SDC3O75056 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.65□□□□□ -2.31
SDC3O75056 AL049861.1-201ENST00000603130 150 ntBASIC0.65□□□□□ -2.31
SDC3O75056 AC243994.1-201ENST00000618627 109 ntBASIC0.65□□□□□ -2.31
SDC3O75056 7SK.10-201ENST00000621414 298 ntBASIC0.65□□□□□ -2.31
SDC3O75056 SNORD115-34-201ENST00000362441 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 Y_RNA.26-201ENST00000362539 101 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-12-201ENST00000362583 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-29-201ENST00000362834 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-9-201ENST00000362912 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-21-201ENST00000362963 81 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-14-201ENST00000363090 81 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-13-201ENST00000363358 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-41-201ENST00000363608 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 Y_RNA.153-201ENST00000363615 91 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-11-201ENST00000363616 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-5-201ENST00000363633 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-39-201ENST00000363694 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-4-201ENST00000363810 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-16-201ENST00000363887 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-6-201ENST00000363942 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 Y_RNA.216-201ENST00000364205 93 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-42-201ENST00000364273 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-15-201ENST00000364809 81 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-1-201ENST00000364961 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-26-201ENST00000365067 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-10-201ENST00000365073 81 ntBASIC0.64□□□□□ -2.31
SDC3O75056 RNU6-580P-201ENST00000365159 107 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-43-201ENST00000365503 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-36-201ENST00000365629 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 MIR1827-201ENST00000408549 66 ntBASIC0.64□□□□□ -2.31
SDC3O75056 MTCYBP6-201ENST00000441810 138 ntBASIC0.64□□□□□ -2.31
SDC3O75056 AC087499.4-201ENST00000448505 178 ntBASIC0.64□□□□□ -2.31
SDC3O75056 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.64□□□□□ -2.31
SDC3O75056 RNU6-126P-201ENST00000516685 103 ntBASIC0.64□□□□□ -2.31
SDC3O75056 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.64□□□□□ -2.31
SDC3O75056 SNORD115-40-201ENST00000606510 82 ntBASIC0.64□□□□□ -2.31
SDC3O75056 AL008718.3-201ENST00000610217 321 ntBASIC0.64□□□□□ -2.31
SDC3O75056 snoU18.1-201ENST00000629629 71 ntBASIC0.64□□□□□ -2.31
SDC3O75056 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
SDC3O75056 Y_RNA.64-201ENST00000362845 102 ntBASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.84-201ENST00000363011 104 ntBASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.293-201ENST00000364908 93 ntBASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.376-201ENST00000365638 108 ntBASIC0.63□□□□□ -2.31
SDC3O75056 MIR193B-201ENST00000384907 83 ntBASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.587-201ENST00000391210 103 ntBASIC0.63□□□□□ -2.31
SDC3O75056 SNORD99-201ENST00000408612 74 ntBASIC0.63□□□□□ -2.31
SDC3O75056 RNU6-985P-201ENST00000410182 104 ntBASIC0.63□□□□□ -2.31
SDC3O75056 RNU6-994P-201ENST00000410507 111 ntBASIC0.63□□□□□ -2.31
SDC3O75056 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
SDC3O75056 MTND5P15-201ENST00000434246 349 ntBASIC0.63□□□□□ -2.31
SDC3O75056 AC107297.1-201ENST00000459991 176 ntBASIC0.63□□□□□ -2.31
SDC3O75056 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.63□□□□□ -2.31
SDC3O75056 SERF1AP1-201ENST00000514575 187 ntBASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.666-201ENST00000516187 112 ntBASIC0.63□□□□□ -2.31
SDC3O75056 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.63□□□□□ -2.31
SDC3O75056 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.63□□□□□ -2.31
SDC3O75056 Y_RNA.16-201ENST00000362421 102 ntBASIC0.62□□□□□ -2.31
SDC3O75056 RNA5SP347-201ENST00000362445 119 ntBASIC0.62□□□□□ -2.31
SDC3O75056 SNORA2B-201ENST00000384583 137 ntBASIC0.62□□□□□ -2.31
SDC3O75056 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.62□□□□□ -2.31
SDC3O75056 snoU13.16-201ENST00000459350 104 ntBASIC0.62□□□□□ -2.31
SDC3O75056 COX6CP6-201ENST00000490840 228 ntBASIC0.62□□□□□ -2.31
SDC3O75056 RNU6-1137P-201ENST00000517073 99 ntBASIC0.62□□□□□ -2.31
SDC3O75056 AC007751.1-201ENST00000529260 376 ntBASIC0.62□□□□□ -2.31
SDC3O75056 Y_RNA.802-201ENST00000614892 130 ntBASIC0.62□□□□□ -2.31
SDC3O75056 SNORD115-28-201ENST00000363931 81 ntBASIC0.61□□□□□ -2.31
SDC3O75056 SNORA33.2-201ENST00000365413 134 ntBASIC0.61□□□□□ -2.31
SDC3O75056 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
SDC3O75056 SNORD24-201ENST00000383884 75 ntBASIC0.61□□□□□ -2.31
SDC3O75056 Y_RNA.486-201ENST00000384398 107 ntBASIC0.61□□□□□ -2.31
SDC3O75056 RNA5SP95-201ENST00000410319 137 ntBASIC0.61□□□□□ -2.31
SDC3O75056 RNU6-1203P-201ENST00000410703 110 ntBASIC0.61□□□□□ -2.31
SDC3O75056 RNU6-1338P-201ENST00000516328 91 ntBASIC0.61□□□□□ -2.31
SDC3O75056 Y_RNA.701-201ENST00000516812 110 ntBASIC0.61□□□□□ -2.31
SDC3O75056 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.61□□□□□ -2.31
SDC3O75056 AC012433.1-201ENST00000588916 398 ntBASIC0.61□□□□□ -2.31
SDC3O75056 AL356055.1-201ENST00000602528 446 ntBASIC0.61□□□□□ -2.31
SDC3O75056 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.61□□□□□ -2.31
SDC3O75056 SNORD114-23-201ENST00000363536 72 ntBASIC0.6□□□□□ -2.31
SDC3O75056 SNORD45.3-201ENST00000363836 72 ntBASIC0.6□□□□□ -2.31
SDC3O75056 Y_RNA.275-201ENST00000364726 110 ntBASIC0.6□□□□□ -2.31
SDC3O75056 SNORA40.5-201ENST00000391061 128 ntBASIC0.6□□□□□ -2.31
SDC3O75056 RNA5SP193-201ENST00000410353 107 ntBASIC0.6□□□□□ -2.31
SDC3O75056 RNU6-229P-201ENST00000516614 102 ntBASIC0.6□□□□□ -2.31
SDC3O75056 AC004817.2-201ENST00000561794 651 ntBASIC0.6□□□□□ -2.31
SDC3O75056 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
SDC3O75056 MIR4264-201ENST00000583520 66 ntBASIC0.6□□□□□ -2.31
SDC3O75056 AP000753.3-201ENST00000604083 169 ntBASIC0.6□□□□□ -2.31
SDC3O75056 AC243829.3-201ENST00000622177 108 ntBASIC0.6□□□□□ -2.31
SDC3O75056 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.31
SDC3O75056 MIR1-1-201ENST00000362147 71 ntBASIC0.59□□□□□ -2.31
SDC3O75056 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
SDC3O75056 Y_RNA.241-201ENST00000364470 117 ntBASIC0.59□□□□□ -2.31
SDC3O75056 RNU6-211P-201ENST00000384047 107 ntBASIC0.59□□□□□ -2.31
SDC3O75056 Y_RNA.494-201ENST00000384432 111 ntBASIC0.59□□□□□ -2.31
SDC3O75056 SNORA8.3-201ENST00000384679 139 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 171.4 ms