Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORD114-27-201ENST00000363766 70 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 Y_RNA.277-201ENST00000364754 102 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 Y_RNA.304-201ENST00000365011 112 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 SNORD24-201ENST00000383884 75 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 MIR1285-1-201ENST00000408593 84 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.12□□□□□ -2.23
HOXC11O43248 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.12□□□□□ -2.23
HOXC11O43248 MIR4661-201ENST00000582720 75 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 MIR6767-201ENST00000637302 66 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.12□□□□□ -2.23
HOXC11O43248 AL391516.1-201ENST00000554380 2449 ntBASIC1.12□□□□□ -2.23
HOXC11O43248 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.12□□□□□ -2.23
HOXC11O43248 Y_RNA.199-201ENST00000364014 102 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 Y_RNA.262-201ENST00000364641 102 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 RNU6-396P-201ENST00000365369 105 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 Y_RNA.432-201ENST00000384087 111 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 MIR616-201ENST00000385293 97 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 RNU2-38P-201ENST00000410856 79 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.11□□□□□ -2.23
HOXC11O43248 SNORD127-201ENST00000458892 86 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 RNU7-67P-201ENST00000459003 62 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.11□□□□□ -2.23
HOXC11O43248 MIR2115-201ENST00000516657 100 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 AC023827.1-201ENST00000569247 97 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 MTND1P7-201ENST00000632801 297 ntBASIC1.11□□□□□ -2.23
HOXC11O43248 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-34-201ENST00000362441 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-12-201ENST00000362583 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-29-201ENST00000362834 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-9-201ENST00000362912 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-21-201ENST00000362963 81 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-14-201ENST00000363090 81 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-13-201ENST00000363358 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-41-201ENST00000363608 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-11-201ENST00000363616 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-5-201ENST00000363633 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-39-201ENST00000363694 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-4-201ENST00000363810 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-16-201ENST00000363887 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-6-201ENST00000363942 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-42-201ENST00000364273 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-15-201ENST00000364809 81 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-1-201ENST00000364961 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-26-201ENST00000365067 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-10-201ENST00000365073 81 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-43-201ENST00000365503 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-36-201ENST00000365629 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 Y_RNA.416-201ENST00000384014 113 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 MT-TT-201ENST00000387460 66 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 RNU6-1228P-201ENST00000391014 107 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 AL606845.1-201ENST00000404881 255 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 Y_RNA.622-201ENST00000411091 108 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 MTCYBP9-201ENST00000431021 303 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 FABP5P4-201ENST00000437203 171 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 AL392103.1-201ENST00000447000 198 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 RNU6-1270P-201ENST00000517128 108 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORA4-201ENST00000584302 138 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 AL353621.2-201ENST00000605340 133 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 SNORD115-40-201ENST00000606510 82 ntBASIC1.1□□□□□ -2.23
HOXC11O43248 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.23
HOXC11O43248 RNU4-17P-201ENST00000365598 141 ntBASIC1.09□□□□□ -2.23
HOXC11O43248 SNORD61-201ENST00000384252 73 ntBASIC1.09□□□□□ -2.23
HOXC11O43248 RNA5SP153-201ENST00000516498 76 ntBASIC1.09□□□□□ -2.23
HOXC11O43248 AL442067.1-201ENST00000613261 223 ntBASIC1.09□□□□□ -2.23
HOXC11O43248 AC134878.1-201ENST00000619901 243 ntBASIC1.09□□□□□ -2.23
HOXC11O43248 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
HOXC11O43248 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.08□□□□□ -2.24
HOXC11O43248 Y_RNA.133-201ENST00000363428 110 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 SNORA40.5-201ENST00000391061 128 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 SNORD111-201ENST00000408139 94 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 SNORA79-201ENST00000408376 140 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 AC067940.1-201ENST00000458411 300 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 RNU6-1132P-201ENST00000459214 107 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.08□□□□□ -2.24
HOXC11O43248 PDCD5P2-201ENST00000507570 312 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 RNU2-13P-201ENST00000515909 113 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 AC007751.1-201ENST00000529260 376 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 AP003484.1-201ENST00000530974 250 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 AC131055.1-201ENST00000584626 316 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 MIR7111-201ENST00000619751 72 ntBASIC1.08□□□□□ -2.24
HOXC11O43248 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HOXC11O43248 Y_RNA.37-201ENST00000362606 108 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 RNU6-888P-201ENST00000363010 101 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 Y_RNA.118-201ENST00000363300 101 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 snoU2_19.4-201ENST00000364329 80 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 Y_RNA.634-201ENST00000364811 113 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 Y_RNA.292-201ENST00000364904 97 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 MIR520E-201ENST00000384867 87 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 snoU13.16-201ENST00000459350 104 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 snoU13.18-201ENST00000459483 104 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 RNU6-113P-201ENST00000516653 101 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 MIR548AO-201ENST00000579992 96 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 MIR6516-201ENST00000630554 81 ntBASIC1.07□□□□□ -2.24
HOXC11O43248 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
HOXC11O43248 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
HOXC11O43248 SNORD113.3-201ENST00000364630 78 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 SNORA2B-201ENST00000384583 137 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 MIR518F-201ENST00000384973 87 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 MIR568-201ENST00000385036 95 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms