Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.242-201ENST00000364473 110 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 RNU6-740P-201ENST00000364734 105 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 SNORD114-24-201ENST00000365029 72 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 RNU6-1138P-201ENST00000365359 106 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 SNORD114-22-201ENST00000365423 72 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 RNU6-472P-201ENST00000384299 107 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 RNU6-1011P-201ENST00000384668 107 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.574-201ENST00000384766 95 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 MIR200A-201ENST00000384875 90 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 MIR499A-201ENST00000384903 122 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 MIR1302-7-201ENST00000408841 72 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 AC023449.1-201ENST00000454464 154 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1□□□□□ -2.25
CPSF3Q9UKF6 SNORD77.4-201ENST00000516158 81 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 AL442663.2-201ENST00000554385 511 ntBASIC1□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.145-201ENST00000363527 102 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 RNU1-36P-201ENST00000365130 165 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.461-201ENST00000384263 103 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 RNU6-738P-201ENST00000384531 106 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.518-201ENST00000384552 113 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 SNORD2.1-201ENST00000458762 69 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 RNU7-90P-201ENST00000459216 62 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 MIR3973-201ENST00000579824 107 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 AC008737.2-201ENST00000599446 118 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 AL020996.3-201ENST00000606617 222 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 SEPT14P17-201ENST00000617978 177 ntBASIC0.99□□□□□ -2.25
CPSF3Q9UKF6 MIR335-201ENST00000362173 94 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.24-201ENST00000362508 103 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.330-201ENST00000365230 109 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.547-201ENST00000384654 119 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 MIR548O-201ENST00000408583 114 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AL392103.1-201ENST00000447000 198 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.666-201ENST00000516187 112 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AC100767.1-201ENST00000528178 123 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AL117187.1-201ENST00000555482 181 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 MIR5688-201ENST00000580619 83 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 AC006006.1-201ENST00000603082 144 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.98□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.226-201ENST00000364337 114 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.229-201ENST00000364347 113 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.486-201ENST00000384398 107 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 SNORA8.3-201ENST00000384679 139 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 MIR626-201ENST00000385032 94 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.587-201ENST00000391210 103 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 MIR1302-6-201ENST00000408466 90 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 AC007751.1-201ENST00000529260 376 ntBASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.97□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.82-201ENST00000363000 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.92-201ENST00000363043 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.191-201ENST00000363972 113 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.235-201ENST00000364412 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.306-201ENST00000365015 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.312-201ENST00000365089 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.322-201ENST00000365151 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.396-201ENST00000383949 103 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.650-201ENST00000459002 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 RNU2-13P-201ENST00000515909 113 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.777-201ENST00000516982 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.771-201ENST00000598668 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.789-201ENST00000622480 102 ntBASIC0.96□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.370-201ENST00000365589 108 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.537-201ENST00000384626 109 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 MIR520E-201ENST00000384867 87 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 AC023827.1-201ENST00000569247 97 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 MIR4662B-201ENST00000579498 81 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 MIR4452-201ENST00000583004 71 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 AC131055.1-201ENST00000584626 316 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 MIR4791-201ENST00000607666 84 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 MIR6516-201ENST00000630554 81 ntBASIC0.95□□□□□ -2.26
CPSF3Q9UKF6 RNU6-654P-201ENST00000364373 107 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 SNORA1.2-201ENST00000365189 134 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 SNORA51.10-201ENST00000384418 136 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 AL358176.2-201ENST00000425769 204 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 RNU11-2P-201ENST00000516898 142 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 AC109810.1-201ENST00000534066 224 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 MIR4698-201ENST00000577795 80 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 MIR548AO-201ENST00000579992 96 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 FAM71BP1-201ENST00000604431 523 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 AL360085.1-201ENST00000604713 532 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 MTND1P7-201ENST00000632801 297 ntBASIC0.94□□□□□ -2.26
CPSF3Q9UKF6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.47-201ENST00000362697 108 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.176-201ENST00000363815 109 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.459-201ENST00000384251 102 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.494-201ENST00000384432 111 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 MIR548A2-201ENST00000384956 97 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 MIR518F-201ENST00000384973 87 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 PDCD5P2-201ENST00000507570 312 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 MIR4282-201ENST00000583613 67 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms