Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR5692C2-201ENST00000577959 77 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 MIR4680-201ENST00000580906 66 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 AC037487.3-201ENST00000606668 112 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 MIR6515-201ENST00000619843 57 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 AC022140.2-201ENST00000623500 188 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 MIR6516-201ENST00000630554 81 ntBASIC0.72□□□□□ -2.29
LHX3Q9UBR4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
LHX3Q9UBR4 Y_RNA.14-201ENST00000362415 103 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.16-201ENST00000362421 102 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 SNORA51.10-201ENST00000384418 136 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.604-201ENST00000410574 102 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 AL035398.1-201ENST00000430869 322 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 AC067940.1-201ENST00000458411 300 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 RNU4-57P-201ENST00000515980 135 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 RNU7-25P-201ENST00000516544 62 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 RNU6-1137P-201ENST00000517073 99 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 AP003733.2-201ENST00000529409 171 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 AC025627.3-201ENST00000582078 182 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 AL355297.3-201ENST00000604082 446 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 MIR4791-201ENST00000607666 84 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 uc_338.4-201ENST00000616635 176 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 MIR6835-201ENST00000621552 64 ntBASIC0.71□□□□□ -2.3
LHX3Q9UBR4 MIR367-201ENST00000362299 68 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 RNU6-797P-201ENST00000363101 109 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.153-201ENST00000363615 91 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 SNORD113.3-201ENST00000364630 78 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 SNORA1.2-201ENST00000365189 134 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 RNU6-326P-201ENST00000365480 107 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 SNORA2B-201ENST00000384583 137 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 MIR508-201ENST00000384857 115 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 AC005534.2-201ENST00000431047 433 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 MTND5P22-201ENST00000458380 195 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.7□□□□□ -2.3
LHX3Q9UBR4 MIR548AO-201ENST00000579992 96 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.7□□□□□ -2.3
LHX3Q9UBR4 MIR4653-201ENST00000585107 83 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 7SK.10-201ENST00000621414 298 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 MTND1P7-201ENST00000632801 297 ntBASIC0.7□□□□□ -2.3
LHX3Q9UBR4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
LHX3Q9UBR4 RNU4-10P-201ENST00000364383 140 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.537-201ENST00000384626 109 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.547-201ENST00000384654 119 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 MIR146A-201ENST00000385201 99 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 RNU6-994P-201ENST00000410507 111 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AC006461.1-201ENST00000412637 326 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 MTND4LP30-201ENST00000454092 297 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AC113410.1-201ENST00000505029 247 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.666-201ENST00000516187 112 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 RNU6-1110P-201ENST00000516462 101 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 SNORA27.4-201ENST00000516650 95 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 SCARNA24.2-201ENST00000516968 130 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.69□□□□□ -2.3
LHX3Q9UBR4 MIR4724-201ENST00000579485 89 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 MIR4714-201ENST00000580728 77 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AL021707.8-201ENST00000609428 183 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AL008718.3-201ENST00000610217 321 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AL136317.1-201ENST00000612653 226 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 AC022709.1-201ENST00000615967 87 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.69□□□□□ -2.3
LHX3Q9UBR4 snoU18.1-201ENST00000629629 71 ntBASIC0.69□□□□□ -2.3
LHX3Q9UBR4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.152-201ENST00000363578 100 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.276-201ENST00000364732 109 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 RNA5SP496-201ENST00000391240 109 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 MIR548O-201ENST00000408583 114 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 SCARNA8-201ENST00000515924 131 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 MIR2115-201ENST00000516657 100 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AL356055.1-201ENST00000602528 446 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 AC104465.1-201ENST00000611365 139 ntBASIC0.68□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.84-201ENST00000363011 104 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.202-201ENST00000364083 110 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.217-201ENST00000364214 105 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6-396P-201ENST00000365369 105 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 MIR598-201ENST00000384868 97 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 MIR100-201ENST00000385259 80 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6-613P-201ENST00000410412 108 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6-847P-201ENST00000411115 108 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.641-201ENST00000459414 105 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6-1143P-201ENST00000516125 104 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.701-201ENST00000516812 110 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 RNU6-570P-201ENST00000517051 105 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 MIR5000-201ENST00000577717 103 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 AC243994.1-201ENST00000618627 109 ntBASIC0.67□□□□□ -2.3
LHX3Q9UBR4 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.67□□□□□ -2.3
LHX3Q9UBR4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.494-201ENST00000384432 111 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 RNU6-110P-201ENST00000384508 104 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 Y_RNA.587-201ENST00000391210 103 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 SNORD99-201ENST00000408612 74 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 RPS26P5-201ENST00000418544 335 ntBASIC0.66□□□□□ -2.3
LHX3Q9UBR4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms