Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.7□□□□□ -2.3
VPS54Q9P1Q0 AC131281.1-201ENST00000522984 164 ntBASIC0.7□□□□□ -2.3
VPS54Q9P1Q0 AP003484.1-201ENST00000530974 250 ntBASIC0.7□□□□□ -2.3
VPS54Q9P1Q0 MIR5692C2-201ENST00000577959 77 ntBASIC0.7□□□□□ -2.3
VPS54Q9P1Q0 uc_338.4-201ENST00000616635 176 ntBASIC0.7□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.14-201ENST00000362415 103 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 RNU6-1272P-201ENST00000362776 107 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.64-201ENST00000362845 102 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.293-201ENST00000364908 93 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 SNORA1.2-201ENST00000365189 134 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.455-201ENST00000384230 98 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 SNORD99-201ENST00000408612 74 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 BTF3P11-201ENST00000426582 477 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 MTCO2P12-201ENST00000427426 682 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC091959.1-201ENST00000495857 238 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC113410.1-201ENST00000505029 247 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.666-201ENST00000516187 112 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 MIR5000-201ENST00000577717 103 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC113195.1-201ENST00000579952 141 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 MIR3171-201ENST00000584270 74 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 SNORA4-201ENST00000584302 138 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC104465.1-201ENST00000611365 139 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 AC243994.1-201ENST00000618627 109 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 MIR6734-201ENST00000621166 68 ntBASIC0.69□□□□□ -2.3
VPS54Q9P1Q0 SNORA25.1-201ENST00000362326 128 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.16-201ENST00000362421 102 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.158-201ENST00000363651 101 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.242-201ENST00000364473 110 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 RNU6-396P-201ENST00000365369 105 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.494-201ENST00000384432 111 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 MIR518E-201ENST00000385252 88 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 RNU6-613P-201ENST00000410412 108 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 RNU6-847P-201ENST00000411115 108 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 AC067940.1-201ENST00000458411 300 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 RNU2-13P-201ENST00000515909 113 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 RNU6-1110P-201ENST00000516462 101 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 MIR2115-201ENST00000516657 100 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 AL021707.8-201ENST00000609428 183 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 snoU18.1-201ENST00000629629 71 ntBASIC0.68□□□□□ -2.3
VPS54Q9P1Q0 MIR367-201ENST00000362299 68 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 RNU6-326P-201ENST00000365480 107 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 RNU6-514P-201ENST00000384208 107 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 SNORA53-201ENST00000391141 249 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 RNA5SP496-201ENST00000391240 109 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 MIR548P-201ENST00000408336 84 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 MIR4724-201ENST00000579485 89 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 MIR4680-201ENST00000580906 66 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 AC025627.3-201ENST00000582078 182 ntBASIC0.67□□□□□ -2.3
VPS54Q9P1Q0 RNA5SP499-201ENST00000363982 119 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 RNU4-10P-201ENST00000364383 140 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 RNU6-42P-201ENST00000384165 107 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.486-201ENST00000384398 107 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 MIR548O-201ENST00000408583 114 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 SCARNA8-201ENST00000515924 131 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 SNORA27.4-201ENST00000516650 95 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 RNU6-1137P-201ENST00000517073 99 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 AC020661.2-201ENST00000560114 134 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 AL355297.3-201ENST00000604082 446 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 AC037487.3-201ENST00000606668 112 ntBASIC0.66□□□□□ -2.3
VPS54Q9P1Q0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
VPS54Q9P1Q0 Y_RNA.217-201ENST00000364214 105 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 RNU6-110P-201ENST00000384508 104 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 MTND5P22-201ENST00000458380 195 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.641-201ENST00000459414 105 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 AC007751.1-201ENST00000529260 376 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 AP003733.2-201ENST00000529409 171 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 AL008718.3-201ENST00000610217 321 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 RMST_2.1-201ENST00000617263 136 ntBASIC0.65□□□□□ -2.31
VPS54Q9P1Q0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 MIR1-1-201ENST00000362147 71 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.122-201ENST00000363331 96 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.168-201ENST00000363740 102 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.241-201ENST00000364470 117 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 MIR92A1-201ENST00000385233 78 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 RNU6-205P-201ENST00000390858 107 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.587-201ENST00000391210 103 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 MIR1827-201ENST00000408549 66 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 AC090844.1-201ENST00000422019 156 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 RNU7-67P-201ENST00000459003 62 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 snoU13.21-201ENST00000459368 105 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 AC107297.1-201ENST00000459991 176 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 MTCO2P24-201ENST00000515611 426 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 SCARNA24.2-201ENST00000516968 130 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 AC004817.2-201ENST00000561794 651 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 AL136317.1-201ENST00000612653 226 ntBASIC0.64□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.84-201ENST00000363011 104 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.153-201ENST00000363615 91 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 SNORD45.3-201ENST00000363836 72 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.276-201ENST00000364732 109 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 RNU6-1138P-201ENST00000365359 106 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 RNU6-125P-201ENST00000384505 107 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.572-201ENST00000384757 98 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms