Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNY4P18-201ENST00000391107 89 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 SNORA26.9-201ENST00000391322 122 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 MIR4778-201ENST00000577635 80 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 SNORD14A-201ENST00000606526 91 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 AL137067.1-201ENST00000615933 120 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 AL442644.1-201ENST00000454390 3105 ntBASIC2.85□□□□□ -1.95
CCDC87Q9NVE4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 Y_RNA.226-201ENST00000364337 114 ntBASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 Y_RNA.440-201ENST00000384120 114 ntBASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 Y_RNA.454-201ENST00000384224 113 ntBASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 HSPE1P9-201ENST00000440046 311 ntBASIC2.84□□□□□ -1.95
CCDC87Q9NVE4 MTND5P18-201ENST00000445624 1801 ntBASIC2.84□□□□□ -1.96
CCDC87Q9NVE4 SNORD116-21-201ENST00000384507 92 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 U8.13-201ENST00000390842 128 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 RNU6-938P-201ENST00000411285 103 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 HMGN2P35-201ENST00000412164 270 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 CALM2P4-201ENST00000430810 426 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 Y_RNA.649-201ENST00000459077 103 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 RNA5SP168-201ENST00000516642 112 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 SNORA18.7-201ENST00000516910 131 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 RNU6-1116P-201ENST00000517269 99 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 MIR7111-201ENST00000619751 72 ntBASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC87Q9NVE4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNU6-112P-201ENST00000363599 104 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 SNORA25.6-201ENST00000364121 118 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNU6-153P-201ENST00000364422 104 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNU1-52P-201ENST00000384190 164 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 U8.16-201ENST00000391279 133 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNA5SP501-201ENST00000410990 112 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 AC015922.2-201ENST00000435593 184 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 PDCD5P2-201ENST00000507570 312 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 AC108729.3-201ENST00000513484 108 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNU7-12P-201ENST00000516030 62 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 SNORD36C-201ENST00000516733 66 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 IGKV1-22-201ENST00000524313 326 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.82□□□□□ -1.96
CCDC87Q9NVE4 RNU6-755P-201ENST00000364400 103 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 RNU1-133P-201ENST00000364867 167 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 RNU6-880P-201ENST00000384526 107 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 Y_RNA.528-201ENST00000384575 108 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 MIR452-201ENST00000385020 85 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 MIR1263-201ENST00000408324 86 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 COX6CP6-201ENST00000490840 228 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 MIR4498-201ENST00000577599 66 ntBASIC2.81□□□□□ -1.96
CCDC87Q9NVE4 SNORA4.2-201ENST00000365313 147 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 Y_RNA.351-201ENST00000365436 96 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 RNU6-296P-201ENST00000384608 107 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 RPL23AP63-201ENST00000498752 471 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 RNU6-1053P-201ENST00000515930 101 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 RNA5SP200-201ENST00000516360 103 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 SNORA31.15-201ENST00000516771 132 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 MIR4709-201ENST00000577272 72 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 MIR4529-201ENST00000578110 78 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 AL513423.1-201ENST00000621695 132 ntBASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC87Q9NVE4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CCDC87Q9NVE4 Y_RNA.366-201ENST00000365540 102 ntBASIC2.79□□□□□ -1.96
CCDC87Q9NVE4 AC063976.4-201ENST00000421971 163 ntBASIC2.79□□□□□ -1.96
CCDC87Q9NVE4 AC009831.4-201ENST00000620744 325 ntBASIC2.79□□□□□ -1.96
CCDC87Q9NVE4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 RNU6-349P-201ENST00000362402 107 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 RNU1-17P-201ENST00000363022 152 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 SNORA3A-201ENST00000364113 130 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 RNU6-690P-201ENST00000365242 106 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 RNY1P6-201ENST00000384193 109 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 snoU13.27-201ENST00000459278 104 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 AC010297.1-201ENST00000623948 149 ntBASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC87Q9NVE4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-34-201ENST00000362441 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-12-201ENST00000362583 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-29-201ENST00000362834 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-9-201ENST00000362912 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-21-201ENST00000362963 81 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-14-201ENST00000363090 81 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-13-201ENST00000363358 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-41-201ENST00000363608 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-11-201ENST00000363616 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-5-201ENST00000363633 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-39-201ENST00000363694 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-4-201ENST00000363810 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-16-201ENST00000363887 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-6-201ENST00000363942 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-42-201ENST00000364273 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-15-201ENST00000364809 81 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-1-201ENST00000364961 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-26-201ENST00000365067 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-10-201ENST00000365073 81 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORA1.2-201ENST00000365189 134 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-43-201ENST00000365503 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-36-201ENST00000365629 82 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms