Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP481-201ENST00000516814 122 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 RNU6-537P-201ENST00000517277 103 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 MIR5197-201ENST00000583721 112 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AC046143.2-201ENST00000609789 160 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AL137067.1-201ENST00000615933 120 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AC009831.4-201ENST00000620744 325 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 MIR1291-201ENST00000627649 87 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 MIR126-201ENST00000362291 85 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 Y_RNA.328-201ENST00000365208 113 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 SNORA3.2-201ENST00000408221 125 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 MIR1261-201ENST00000408659 82 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 FTH1P12-201ENST00000432137 551 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 COX6CP6-201ENST00000490840 228 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 RPS26P48-201ENST00000491713 339 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 RNU6-412P-201ENST00000516434 106 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP281-201ENST00000516504 135 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 SNORA31.17-201ENST00000516953 127 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 AC087685.1-201ENST00000587507 141 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 AL035470.1-201ENST00000622571 220 ntBASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.26□□□□□ -2.05
CLIP3Q96DZ5 SNORA1B-201ENST00000362535 133 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 Y_RNA.267-201ENST00000364679 109 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 SNRPGP14-201ENST00000435400 219 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP437-201ENST00000517249 129 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 AC022254.1-201ENST00000567857 235 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 AC103810.6-201ENST00000606708 136 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 AL627230.6-201ENST00000611129 280 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 AC106754.2-201ENST00000623006 233 ntBASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CLIP3Q96DZ5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 RNU6-766P-201ENST00000362478 107 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 Y_RNA.163-201ENST00000363702 113 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP109-201ENST00000391010 116 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 RNY4P30-201ENST00000410216 95 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 RPL23AP63-201ENST00000498752 471 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 MIR4713-201ENST00000582691 75 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 AC022217.4-201ENST00000604389 163 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 MIR6873-201ENST00000622788 63 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.24□□□□□ -2.05
CLIP3Q96DZ5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 RNU6-950P-201ENST00000384651 107 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 MT-TI-201ENST00000387365 69 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 RN7SKP192-201ENST00000411291 327 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AC245047.3-201ENST00000429428 127 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AL356320.1-201ENST00000429616 163 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 HSPE1P9-201ENST00000440046 311 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AL606517.2-201ENST00000442855 241 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 RNU6-240P-201ENST00000516098 97 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 MIR4762-201ENST00000585261 75 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 RNU6-94P-201ENST00000607728 107 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AC006441.5-201ENST00000612680 209 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 AP001318.4-201ENST00000616637 121 ntBASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CLIP3Q96DZ5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 RNU6-349P-201ENST00000362402 107 ntBASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 Y_RNA.323-201ENST00000365157 109 ntBASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 RPS12P2-201ENST00000439728 269 ntBASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 AC104984.5-201ENST00000586878 94 ntBASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 AC002984.1-201ENST00000591692 448 ntBASIC2.22□□□□□ -2.05
CLIP3Q96DZ5 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.198-201ENST00000364013 98 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 U8.5-201ENST00000364528 136 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU6-1014P-201ENST00000383940 103 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU6-756P-201ENST00000383997 107 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 SNORA51.10-201ENST00000384418 136 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 MIR548O-201ENST00000408583 114 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU6-938P-201ENST00000411285 103 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 HMGN2P32-201ENST00000444648 269 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 AL049830.1-201ENST00000468034 425 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU1-41P-201ENST00000516161 162 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU1-48P-201ENST00000516400 162 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 RNU7-25P-201ENST00000516544 62 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 AP002004.2-201ENST00000531656 154 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 MIR6715A-201ENST00000615929 79 ntBASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
CLIP3Q96DZ5 AC016717.2-201ENST00000609089 5141 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 RNU6-268P-201ENST00000364174 107 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.242-201ENST00000364473 110 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 U8.6-201ENST00000364939 135 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.410-201ENST00000383992 113 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 RNU6-360P-201ENST00000390944 104 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 MIR1302-4-201ENST00000408701 150 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 RNY4P20-201ENST00000516678 93 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 AC134878.1-201ENST00000619901 243 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 MIR8054-201ENST00000620877 86 ntBASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms