Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RNU6-383P-201ENST00000410864 94 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 AL035398.1-201ENST00000430869 322 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 MTND5P15-201ENST00000434246 349 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 AC087499.4-201ENST00000448505 178 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 RNY3P15-201ENST00000516297 97 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.701-201ENST00000516812 110 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 RNU6-1137P-201ENST00000517073 99 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 RNU7-181P-201ENST00000517234 74 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 MIR4698-201ENST00000577795 80 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 MIR4769-201ENST00000584126 77 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 SNORD115-40-201ENST00000606510 82 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 MIR4791-201ENST00000607666 84 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 AL008718.3-201ENST00000610217 321 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 MTND1P7-201ENST00000632801 297 ntBASIC0.6□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.11-201ENST00000362375 109 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.26-201ENST00000362539 101 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.216-201ENST00000364205 93 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 RNU6-396P-201ENST00000365369 105 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.518-201ENST00000384552 113 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 SNORD89-201ENST00000390981 114 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 MIR548O-201ENST00000408583 114 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 BTF3P11-201ENST00000426582 477 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 RNU7-25P-201ENST00000516544 62 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 RNU6-113P-201ENST00000516653 101 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 AC023827.1-201ENST00000569247 97 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 AL356055.1-201ENST00000602528 446 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 AL136317.1-201ENST00000612653 226 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.802-201ENST00000614892 130 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 snoU18.1-201ENST00000629629 71 ntBASIC0.59□□□□□ -2.31
RPUSD4Q96CM3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.64-201ENST00000362845 102 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 SNORD114-27-201ENST00000363766 70 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.275-201ENST00000364726 110 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 RNU6-662P-201ENST00000384253 104 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 RNU6-110P-201ENST00000384508 104 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 MIR1827-201ENST00000408549 66 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 RNU2-55P-201ENST00000411146 174 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 snoU13.16-201ENST00000459350 104 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 RNU6-1338P-201ENST00000516328 91 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 AC007751.1-201ENST00000529260 376 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 MIR548AO-201ENST00000579992 96 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 MIR4298-201ENST00000584380 73 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 AC243994.1-201ENST00000618627 109 ntBASIC0.58□□□□□ -2.32
RPUSD4Q96CM3 RNU6-654P-201ENST00000364373 107 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.376-201ENST00000365638 108 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 RNU6-639P-201ENST00000384074 107 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 AC005534.2-201ENST00000431047 433 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 SNORD2.1-201ENST00000458762 69 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 TRMT112P2-201ENST00000512910 132 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 AC004817.2-201ENST00000561794 651 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 MIR3973-201ENST00000579824 107 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 AC044792.1-201ENST00000593294 196 ntBASIC0.57□□□□□ -2.32
RPUSD4Q96CM3 MIR335-201ENST00000362173 94 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.16-201ENST00000362421 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.82-201ENST00000363000 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 RNU6-888P-201ENST00000363010 101 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.92-201ENST00000363043 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.235-201ENST00000364412 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.306-201ENST00000365015 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.312-201ENST00000365089 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.322-201ENST00000365151 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 RNY3P5-201ENST00000384127 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.486-201ENST00000384398 107 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 SNORA8.3-201ENST00000384679 139 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 MIR570-201ENST00000384917 97 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 MIR626-201ENST00000385032 94 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 MIR605-201ENST00000385078 83 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AC113618.1-201ENST00000416747 285 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 RNU7-73P-201ENST00000458743 63 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.650-201ENST00000459002 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AC107297.1-201ENST00000459991 176 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.777-201ENST00000516982 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 MIR4264-201ENST00000583520 66 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.771-201ENST00000598668 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AL049861.1-201ENST00000603130 150 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AC097639.2-201ENST00000603159 172 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AP000942.4-201ENST00000604811 241 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.789-201ENST00000622480 102 ntBASIC0.56□□□□□ -2.32
RPUSD4Q96CM3 SNORD115-28-201ENST00000363931 81 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.293-201ENST00000364908 93 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 RNU6-211P-201ENST00000384047 107 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.422-201ENST00000384054 114 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 MIR548A2-201ENST00000384956 97 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 MIR518F-201ENST00000384973 87 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 SNORA40.5-201ENST00000391061 128 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 RNU6-1109P-201ENST00000391187 107 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 RNU6-938P-201ENST00000411285 103 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AC067940.1-201ENST00000458411 300 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.666-201ENST00000516187 112 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AC100767.1-201ENST00000528178 123 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 189.3 ms