Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SNORA63.5-201ENST00000363548 123 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-41-201ENST00000363608 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-11-201ENST00000363616 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-5-201ENST00000363633 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-39-201ENST00000363694 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 RNU6-414P-201ENST00000363705 104 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-4-201ENST00000363810 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-16-201ENST00000363887 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-6-201ENST00000363942 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 Y_RNA.198-201ENST00000364013 98 ntBASIC2.38□□□□□ -2.03
RNF4P78317 Y_RNA.213-201ENST00000364178 111 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-42-201ENST00000364273 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 Y_RNA.281-201ENST00000364774 94 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-15-201ENST00000364809 81 ntBASIC2.38□□□□□ -2.03
RNF4P78317 RNU6-1107P-201ENST00000364817 104 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-1-201ENST00000364961 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-26-201ENST00000365067 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-10-201ENST00000365073 81 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-43-201ENST00000365503 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-36-201ENST00000365629 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 Y_RNA.500-201ENST00000384466 111 ntBASIC2.38□□□□□ -2.03
RNF4P78317 PGBD4P5-201ENST00000445958 426 ntBASIC2.38□□□□□ -2.03
RNF4P78317 UBE2DNL-203ENST00000474922 222 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORA31.4-201ENST00000516049 129 ntBASIC2.38□□□□□ -2.03
RNF4P78317 RNA5SP481-201ENST00000516814 122 ntBASIC2.38□□□□□ -2.03
RNF4P78317 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.38□□□□□ -2.03
RNF4P78317 SNORD115-40-201ENST00000606510 82 ntBASIC2.38□□□□□ -2.03
RNF4P78317 MIR6817-201ENST00000615588 66 ntBASIC2.38□□□□□ -2.03
RNF4P78317 SNORD3E-202ENST00000627253 216 ntBASIC2.38□□□□□ -2.03
RNF4P78317 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
RNF4P78317 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
RNF4P78317 MIR302B-201ENST00000362188 73 ntBASIC2.37□□□□□ -2.03
RNF4P78317 DEFA7P-201ENST00000382676 285 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNU6-1104P-201ENST00000384723 104 ntBASIC2.37□□□□□ -2.03
RNF4P78317 MIR526A1-201ENST00000384897 85 ntBASIC2.37□□□□□ -2.03
RNF4P78317 MIR136-201ENST00000385207 82 ntBASIC2.37□□□□□ -2.03
RNF4P78317 MIR660-201ENST00000385235 97 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNA5SP210-201ENST00000391034 120 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNA5SP100-201ENST00000410903 110 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNA5SP59-201ENST00000410922 110 ntBASIC2.37□□□□□ -2.03
RNF4P78317 AL035398.1-201ENST00000430869 322 ntBASIC2.37□□□□□ -2.03
RNF4P78317 AL031737.1-201ENST00000450125 223 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNU7-45P-201ENST00000459460 63 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNU7-96P-201ENST00000459535 64 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNU6-412P-201ENST00000516434 106 ntBASIC2.37□□□□□ -2.03
RNF4P78317 RNU2-35P-201ENST00000516446 142 ntBASIC2.37□□□□□ -2.03
RNF4P78317 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.37□□□□□ -2.03
RNF4P78317 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.37□□□□□ -2.03
RNF4P78317 AL513423.1-201ENST00000621695 132 ntBASIC2.37□□□□□ -2.03
RNF4P78317 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.37□□□□□ -2.03
RNF4P78317 AC080100.1-201ENST00000624239 5356 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNU6-1298P-201ENST00000362456 101 ntBASIC2.36□□□□□ -2.03
RNF4P78317 Y_RNA.85-201ENST00000363014 111 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNU1-51P-201ENST00000365345 176 ntBASIC2.36□□□□□ -2.03
RNF4P78317 MIR27B-201ENST00000385129 97 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNA5SP89-201ENST00000410300 108 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNU6-554P-201ENST00000410466 106 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNU2-11P-201ENST00000459191 187 ntBASIC2.36□□□□□ -2.03
RNF4P78317 RNA5SP148-201ENST00000516527 94 ntBASIC2.36□□□□□ -2.03
RNF4P78317 SNORA31.17-201ENST00000516953 127 ntBASIC2.36□□□□□ -2.03
RNF4P78317 MIR4529-201ENST00000578110 78 ntBASIC2.36□□□□□ -2.03
RNF4P78317 MIR4679-2-201ENST00000578358 77 ntBASIC2.36□□□□□ -2.03
RNF4P78317 AC245884.12-201ENST00000615364 59 ntBASIC2.36□□□□□ -2.03
RNF4P78317 U1.36-201ENST00000620684 176 ntBASIC2.36□□□□□ -2.03
RNF4P78317 AC009831.4-201ENST00000620744 325 ntBASIC2.36□□□□□ -2.03
RNF4P78317 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
RNF4P78317 AL442644.1-201ENST00000454390 3105 ntBASIC2.35□□□□□ -2.03
RNF4P78317 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
RNF4P78317 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.35□□□□□ -2.03
RNF4P78317 RNU6-106P-201ENST00000384405 107 ntBASIC2.35□□□□□ -2.03
RNF4P78317 RNU6-168P-201ENST00000516189 101 ntBASIC2.35□□□□□ -2.03
RNF4P78317 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
RNF4P78317 MIR5092-201ENST00000583139 88 ntBASIC2.35□□□□□ -2.03
RNF4P78317 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.35□□□□□ -2.03
RNF4P78317 Y_RNA.362-201ENST00000365518 110 ntBASIC2.34□□□□□ -2.03
RNF4P78317 MIR759-201ENST00000390224 91 ntBASIC2.34□□□□□ -2.03
RNF4P78317 SNORD28B-201ENST00000390993 75 ntBASIC2.34□□□□□ -2.03
RNF4P78317 RNA5SP320-201ENST00000516263 124 ntBASIC2.34□□□□□ -2.03
RNF4P78317 RNA5SP402-201ENST00000517148 110 ntBASIC2.34□□□□□ -2.03
RNF4P78317 U4.3-201ENST00000621047 82 ntBASIC2.34□□□□□ -2.03
RNF4P78317 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
RNF4P78317 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
RNF4P78317 AL589743.1-201ENST00000551932 2712 ntBASIC2.33□□□□□ -2.04
RNF4P78317 Y_RNA.370-201ENST00000365589 108 ntBASIC2.33□□□□□ -2.04
RNF4P78317 RN7SKP192-201ENST00000411291 327 ntBASIC2.33□□□□□ -2.04
RNF4P78317 RNA5SP57-201ENST00000459463 123 ntBASIC2.33□□□□□ -2.04
RNF4P78317 SNORD123-201ENST00000459473 70 ntBASIC2.33□□□□□ -2.04
RNF4P78317 AC107297.1-201ENST00000459991 176 ntBASIC2.33□□□□□ -2.04
RNF4P78317 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.33□□□□□ -2.04
RNF4P78317 MIR3683-201ENST00000580847 82 ntBASIC2.33□□□□□ -2.04
RNF4P78317 MIR6840-201ENST00000611937 71 ntBASIC2.33□□□□□ -2.04
RNF4P78317 AC021613.1-201ENST00000623880 111 ntBASIC2.33□□□□□ -2.04
RNF4P78317 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
RNF4P78317 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
RNF4P78317 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
RNF4P78317 MIR424-201ENST00000362227 98 ntBASIC2.32□□□□□ -2.04
RNF4P78317 RNY4P6-201ENST00000363667 96 ntBASIC2.32□□□□□ -2.04
RNF4P78317 RNU6-457P-201ENST00000363999 107 ntBASIC2.32□□□□□ -2.04
RNF4P78317 SNORA1.2-201ENST00000365189 134 ntBASIC2.32□□□□□ -2.04
RNF4P78317 SNORA6-201ENST00000384033 151 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 230.2 ms