Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Y_RNA.483-201ENST00000384380 101 ntBASIC1□□□□□ -2.25
LHX1P48742 SNORA22C-201ENST00000384614 134 ntBASIC1□□□□□ -2.25
LHX1P48742 Y_RNA.587-201ENST00000391210 103 ntBASIC1□□□□□ -2.25
LHX1P48742 MIR548O-201ENST00000408583 114 ntBASIC1□□□□□ -2.25
LHX1P48742 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1□□□□□ -2.25
LHX1P48742 RNU7-90P-201ENST00000459216 62 ntBASIC1□□□□□ -2.25
LHX1P48742 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1□□□□□ -2.25
LHX1P48742 MTCO2P24-201ENST00000515611 426 ntBASIC1□□□□□ -2.25
LHX1P48742 SNORD77.4-201ENST00000516158 81 ntBASIC1□□□□□ -2.25
LHX1P48742 RNU7-181P-201ENST00000517234 74 ntBASIC1□□□□□ -2.25
LHX1P48742 MIR4662B-201ENST00000579498 81 ntBASIC1□□□□□ -2.25
LHX1P48742 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1□□□□□ -2.25
LHX1P48742 Y_RNA.24-201ENST00000362508 103 ntBASIC0.99□□□□□ -2.25
LHX1P48742 SNORA1.2-201ENST00000365189 134 ntBASIC0.99□□□□□ -2.25
LHX1P48742 Y_RNA.330-201ENST00000365230 109 ntBASIC0.99□□□□□ -2.25
LHX1P48742 Y_RNA.459-201ENST00000384251 102 ntBASIC0.99□□□□□ -2.25
LHX1P48742 RNU6-738P-201ENST00000384531 106 ntBASIC0.99□□□□□ -2.25
LHX1P48742 MT-TW-201ENST00000387382 68 ntBASIC0.99□□□□□ -2.25
LHX1P48742 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.99□□□□□ -2.25
LHX1P48742 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.99□□□□□ -2.25
LHX1P48742 AP003716.2-201ENST00000528260 108 ntBASIC0.99□□□□□ -2.25
LHX1P48742 AL117187.1-201ENST00000555482 181 ntBASIC0.99□□□□□ -2.25
LHX1P48742 Y_RNA.370-201ENST00000365589 108 ntBASIC0.98□□□□□ -2.25
LHX1P48742 MIR570-201ENST00000384917 97 ntBASIC0.98□□□□□ -2.25
LHX1P48742 MIR1185-1-201ENST00000408598 86 ntBASIC0.98□□□□□ -2.25
LHX1P48742 RNU4-57P-201ENST00000515980 135 ntBASIC0.98□□□□□ -2.25
LHX1P48742 RNU7-25P-201ENST00000516544 62 ntBASIC0.98□□□□□ -2.25
LHX1P48742 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.98□□□□□ -2.25
LHX1P48742 AC103810.9-201ENST00000606688 112 ntBASIC0.98□□□□□ -2.25
LHX1P48742 SEPT14P17-201ENST00000617978 177 ntBASIC0.98□□□□□ -2.25
LHX1P48742 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.98□□□□□ -2.25
LHX1P48742 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LHX1P48742 Y_RNA.82-201ENST00000363000 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.92-201ENST00000363043 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.229-201ENST00000364347 113 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.235-201ENST00000364412 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.306-201ENST00000365015 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.312-201ENST00000365089 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.322-201ENST00000365151 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.547-201ENST00000384654 119 ntBASIC0.97□□□□□ -2.25
LHX1P48742 MIR626-201ENST00000385032 94 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.590-201ENST00000410140 107 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.650-201ENST00000459002 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 SCARNA8-201ENST00000515924 131 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.666-201ENST00000516187 112 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.679-201ENST00000516416 91 ntBASIC0.97□□□□□ -2.25
LHX1P48742 RNU6-126P-201ENST00000516685 103 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.777-201ENST00000516982 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.771-201ENST00000598668 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 Y_RNA.789-201ENST00000622480 102 ntBASIC0.97□□□□□ -2.25
LHX1P48742 MIR373-201ENST00000362273 69 ntBASIC0.96□□□□□ -2.26
LHX1P48742 Y_RNA.47-201ENST00000362697 108 ntBASIC0.96□□□□□ -2.26
LHX1P48742 Y_RNA.149-201ENST00000363558 117 ntBASIC0.96□□□□□ -2.26
LHX1P48742 SNORD114-24-201ENST00000365029 72 ntBASIC0.96□□□□□ -2.26
LHX1P48742 RNU6-472P-201ENST00000384299 107 ntBASIC0.96□□□□□ -2.26
LHX1P48742 SNORA51.10-201ENST00000384418 136 ntBASIC0.96□□□□□ -2.26
LHX1P48742 Y_RNA.537-201ENST00000384626 109 ntBASIC0.96□□□□□ -2.26
LHX1P48742 Y_RNA.572-201ENST00000384757 98 ntBASIC0.96□□□□□ -2.26
LHX1P48742 MIR200A-201ENST00000384875 90 ntBASIC0.96□□□□□ -2.26
LHX1P48742 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.96□□□□□ -2.26
LHX1P48742 SNORD2.1-201ENST00000458762 69 ntBASIC0.96□□□□□ -2.26
LHX1P48742 SNORD124-201ENST00000459577 104 ntBASIC0.96□□□□□ -2.26
LHX1P48742 AC100767.1-201ENST00000528178 123 ntBASIC0.96□□□□□ -2.26
LHX1P48742 AC012676.2-201ENST00000619258 186 ntBASIC0.96□□□□□ -2.26
LHX1P48742 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LHX1P48742 Y_RNA.224-201ENST00000364308 111 ntBASIC0.95□□□□□ -2.26
LHX1P48742 Y_RNA.486-201ENST00000384398 107 ntBASIC0.95□□□□□ -2.26
LHX1P48742 MIR520E-201ENST00000384867 87 ntBASIC0.95□□□□□ -2.26
LHX1P48742 RNU6-651P-201ENST00000411040 105 ntBASIC0.95□□□□□ -2.26
LHX1P48742 RNU6-847P-201ENST00000411115 108 ntBASIC0.95□□□□□ -2.26
LHX1P48742 RNU11-2P-201ENST00000516898 142 ntBASIC0.95□□□□□ -2.26
LHX1P48742 AC109810.1-201ENST00000534066 224 ntBASIC0.95□□□□□ -2.26
LHX1P48742 HSPE1P19-201ENST00000603327 295 ntBASIC0.95□□□□□ -2.26
LHX1P48742 AL360085.1-201ENST00000604713 532 ntBASIC0.95□□□□□ -2.26
LHX1P48742 AC211469.2-201ENST00000605461 205 ntBASIC0.95□□□□□ -2.26
LHX1P48742 MIR4791-201ENST00000607666 84 ntBASIC0.95□□□□□ -2.26
LHX1P48742 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
LHX1P48742 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
LHX1P48742 RNU6-1309P-201ENST00000363305 108 ntBASIC0.94□□□□□ -2.26
LHX1P48742 Y_RNA.396-201ENST00000383949 103 ntBASIC0.94□□□□□ -2.26
LHX1P48742 Y_RNA.518-201ENST00000384552 113 ntBASIC0.94□□□□□ -2.26
LHX1P48742 MIR942-201ENST00000401111 86 ntBASIC0.94□□□□□ -2.26
LHX1P48742 UBL5P1-201ENST00000507979 193 ntBASIC0.94□□□□□ -2.26
LHX1P48742 MIR3973-201ENST00000579824 107 ntBASIC0.94□□□□□ -2.26
LHX1P48742 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.93□□□□□ -2.26
LHX1P48742 AL358176.2-201ENST00000425769 204 ntBASIC0.93□□□□□ -2.26
LHX1P48742 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
LHX1P48742 AL392103.1-201ENST00000447000 198 ntBASIC0.93□□□□□ -2.26
LHX1P48742 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.93□□□□□ -2.26
LHX1P48742 AC107297.1-201ENST00000459991 176 ntBASIC0.93□□□□□ -2.26
LHX1P48742 RNU6-365P-201ENST00000517113 106 ntBASIC0.93□□□□□ -2.26
LHX1P48742 AC023827.1-201ENST00000569247 97 ntBASIC0.93□□□□□ -2.26
LHX1P48742 AC243994.1-201ENST00000618627 109 ntBASIC0.93□□□□□ -2.26
LHX1P48742 Y_RNA.54-201ENST00000362766 105 ntBASIC0.92□□□□□ -2.26
LHX1P48742 SNORD115-28-201ENST00000363931 81 ntBASIC0.92□□□□□ -2.26
LHX1P48742 Y_RNA.241-201ENST00000364470 117 ntBASIC0.92□□□□□ -2.26
LHX1P48742 Y_RNA.352-201ENST00000365439 102 ntBASIC0.92□□□□□ -2.26
LHX1P48742 MIR1302-7-201ENST00000408841 72 ntBASIC0.92□□□□□ -2.26
LHX1P48742 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.92□□□□□ -2.26
LHX1P48742 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms